Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1324 ATGGAAGGCAACAAGGACGAAGCACTGCGCTGCGTTCGCATCGCCGAGGAGGCAATCGCGTCGGGGAACAAAGCCCGCGCCCTCAAATTCCTCCGAATCGCGCAGCGCCTCAACCGCGATTTGCCCCTCCAGTCCCTGCACGACACGTGCGAACGCCTCGACTCTCActcctcctcctccgccgccgccgccgcgcCGGCGAAATCCCCCGCGCGAGGCGGCGGCGAGGGTTTGAACGGGGAGAGGAGTTACACGGAAGAGAACGTCAACCTAATTAGGGAAATCAAAGGAAAGAGCGACTACTACGCCATTCTGGGATTAGAGAAGAGCTGCACCGTGGAAGAGATTCGAAAGGCGTATCGGAAACTCTCGCTGAAGGTTCATCCCGACAAGAACAAAGCTCCCGGCTCCGAAGACGCGTTCAAGAAGGTCTCGAAGGCTTTCAAGTGTTTGAGCGACGACGGTTCTAGAAGAATCTACGATCAAACGGGAACCGTTGACGATTTTGAAAGCAGCGAGGTGAACCATTTCAGACGCAGGAGGAGAAGGACAACGACAGCAACAACAACGCACGGTTTTTTCGAGGAGGAGTTCGATCCCGACGAGATATTCAGAGCGTTCTTCGGACAATCCGACGTGTTCTCGAGGAACCACGTTTACAGGGCCCGCGGGATGGGGAACCAGCACAGGCACGAGTTCAACGCCGGGTCGGGAGGGAGGCATCATAATGTCATGCTGCTGATTCAGCTTTTGCCGTTTTTGATCATTGTGCTGCTTGCGTACTTGCCGTTCTCCGAGCCCGAGTATTCCTTGCACAGGCATTACGGCTACCAGATTCCGAAGACGACGGAGCAGCACGGGGTTCCGTTCTTCGTGAAGTTGCCGGCGTTTGAAGAGAATTATCCGCCGGGGAGTGAGGCCCGCGCGGCTGTGGAGGAGAGCGTCATAAAGGATTATAGGAATATGCTTCGGAGGTATTGCCAGGTGGAGATTCAGAGACGGAGTTGGAATAGGAACCTGCCTGCTCCTCACTGTGATAAGCTGCAGAACTTTGCAGTGGTGGCATGA 1068 0.5365 MEGNKDEALRCVRIAEEAIASGNKARALKFLRIAQRLNRDLPLQSLHDTCERLDSHSSSSAAAAAPAKSPARGGGEGLNGERSYTEENVNLIREIKGKSDYYAILGLEKSCTVEEIRKAYRKLSLKVHPDKNKAPGSEDAFKKVSKAFKCLSDDGSRRIYDQTGTVDDFESSEVNHFRRRRRRTTTATTTHGFFEEEFDPDEIFRAFFGQSDVFSRNHVYRARGMGNQHRHEFNAGSGGRHHNVMLLIQLLPFLIIVLLAYLPFSEPEYSLHRHYGYQIPKTTEQHGVPFFVKLPAFEENYPPGSEARAAVEESVIKDYRNMLRRYCQVEIQRRSWNRNLPAPHCDKLQNFAVVA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1324 355 PANTHER CHAPERONE PROTEIN DNAJ 49 1 353 - -
Ssu1g1324 355 CDD DnaJ 100 153 IPR001623 -
Ssu1g1324 355 PANTHER AT29763P-RELATED 1 353 - -
Ssu1g1324 355 Pfam DnaJ domain 100 161 IPR001623 -
Ssu1g1324 355 SUPERFAMILY Chaperone J-domain 96 209 IPR036869 -
Ssu1g1324 355 SMART dnaj_3 99 156 IPR001623 -
Ssu1g1324 355 Pfam Domain of unknown function (DUF1977) 265 335 IPR015399 -
Ssu1g1324 355 PRINTS DnaJ domain signature 136 156 IPR001623 -
Ssu1g1324 355 PRINTS DnaJ domain signature 120 135 IPR001623 -
Ssu1g1324 355 PRINTS DnaJ domain signature 156 175 IPR001623 -
Ssu1g1324 355 PRINTS DnaJ domain signature 102 120 IPR001623 -
Ssu1g1324 355 MobiDBLite consensus disorder prediction 52 82 - -
Ssu1g1324 355 Gene3D DnaJ domain 97 219 IPR036869 -
Ssu1g1324 355 ProSiteProfiles dnaJ domain profile. 100 164 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1324 Ssu-Chr1 29194043 29195110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1324 95 161 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.620 4.13e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1324 K09518 - gmx:100820432 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1324 1 29194043 29195110 Ssu1g1324 1 29194043 29195110 ECH