Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1306 ATGGCTCCAGAGGAAAACCATGAATTCACACACAAATTCAAGGAGAATCCGAATCCGAATCCGAATCCAAGCCCCAATGATTTCGATGAGAAGGGTTACAGCCTCAGCGGCAAAATCATGCTCTCCGCGATAATCCTTCTCTTCTTCGTCGTCGTTTTAATGCTATGTCTCCATATTTACGCGCGGTGGTACCTCAGGCGCGCTCGCCGCCGCCAGCTCCGGCGCCACCGTGAGCGGCACCGCATTCAGCTGGTATTCTACGACGATTCCGGCACCCCATCCGCCTTGTCCCTCGGCCTCGATGCCGCCGTCCTCGCCTCGCTCCCTGTTTTCTCGTACGACCCGAAGACCGACCCGGAAAACGCGCCGGAGTGCGCGGTGTGCCTGTCGGAGTTCGAACCGGGCGAAACGGGTCGGGTTTTGCCCAAGTGTAAGCACAGCTTCCACACCGAATGCATCGACATGTGGTTTCATTCTCACGACACGTGTCCCCTGTGTCGCGCCCCGGTTGAGCGCGCGCCCGAACCGGAAGTGGTGGTTGTAACTGTTCGCGAACGGGAACCCGAACCGGGTTCCGTGGAAGATGAGAACCGAACCGGTTCTTCTTCGGTTGGGGAGAGGAGGAAGCCCTCGTTGGTTGGCGTGACCATTGAGGTGCCTTCGAGGGCCGAGAATTTTAGGGACGAGTCGGGTTGCGACTCACCGTCGACTCAGTCGTCGTTTCGGTCGCCGATGAGTCGCATGTTGTCGTTTAAGAGGATACTCGGCATGGAACGGAAGGGGAATGTTTCTCCGTCGCCGTGCAGTGGTGCTTGTAGTTCGACGGCCGAGTCTGGCGCGGAGCGAGGCGGGCGAGAGGAGACTCCGTGA 870 0.5885 MAPEENHEFTHKFKENPNPNPNPSPNDFDEKGYSLSGKIMLSAIILLFFVVVLMLCLHIYARWYLRRARRRQLRRHRERHRIQLVFYDDSGTPSALSLGLDAAVLASLPVFSYDPKTDPENAPECAVCLSEFEPGETGRVLPKCKHSFHTECIDMWFHSHDTCPLCRAPVERAPEPEVVVVTVREREPEPGSVEDENRTGSSSVGERRKPSLVGVTIEVPSRAENFRDESGCDSPSTQSSFRSPMSRMLSFKRILGMERKGNVSPSPCSGACSSTAESGAERGGREETP 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1306 289 SUPERFAMILY RING/U-box 105 172 - -
Ssu1g1306 289 MobiDBLite consensus disorder prediction 184 289 - -
Ssu1g1306 289 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Ssu1g1306 289 PANTHER RING-H2 FINGER PROTEIN ATL64 31 199 - -
Ssu1g1306 289 SMART ring_2 125 166 IPR001841 -
Ssu1g1306 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 175 IPR013083 -
Ssu1g1306 289 MobiDBLite consensus disorder prediction 230 246 - -
Ssu1g1306 289 CDD RING-H2_EL5_like 124 167 - -
Ssu1g1306 289 Pfam Ring finger domain 124 167 IPR001841 -
Ssu1g1306 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 31 199 - -
Ssu1g1306 289 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1306 Ssu-Chr1 28898087 28898956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1306 23 286 Rapid Response to Elicitors AT3G16720 48.311 1.57e-65 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1306 - - gmx:100791545 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1306 1 28898087 28898956 Ssu1g1306 1 28898087 28898956 ECH
Ssu6g0343 6 5491140 5491892 Ssu1g1306 1 28898087 28898956 PCT