Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1304 ATGGGTGAACATAACAATGGCCATGAACAACGAAGAAAGTTTGCCATTCTTGGCATCTCTTCAATCCTCCTTGTAGCTATGGTGGCTGCGGTGGCTGTTAGTTTAAACCATGGAAGTGGAACTAAAGGAGAAGAAGGGAATGACCATATCTATAGTGCTCAAAGGAACATAGACATGCTTTGCCAATCAACAGAATACCCAGAAACATGTAAGAAAAGCCTTAGGCAAGCATCTAACAAAACCACAGACACGAAGGAGCTCATCAAAGCCGCGATCAATGCCACGGCTGTGGAACTTTTAAATCACATAAACAACTCCACCCTTTATCGTGAGTTGGCCAAGGACAACATGACAAAACAAGCTATGGATATTTGTAAAGAAGTATTTGACTATGCAGTTGATGGTATTCACAAATCTGCTGAGACATTGGACAAGTTTGAATTTAACAAGTTGAGCGAATTTGTTTATGACCTCAAGGTTTGGTTAACGGGGAGTCTTTCTCACCAACAAACTTGCTTGGATGGTTTTGAGAATACAACCACAAAGGCTGGTGAGACAATGGCTAAGGTTATGAATACCTCTTTGGAGCTTAGTAGCAATGCATTGGATATGATCAATATGATATCTAGCTTATTCAAGGATCTTAACCAAAGCACAATTGGCAATAAGAGACTTCTCTCTGAGGAAGCAACACTTATGGATGGTTTTCCTTCATGGGTGAATGAAGGGCAACGACATCTTCTCCAAAGTGCTAGGCTTGGAAGTATTAAGCCCAATTTAGTCGTGGCTCTTGATGGGACTGGCCAATTTAAAACACTCACTGACGCTCTTAAGATTGTTCCCCCTAAGAATGCCCAAACTTTTGTGATTTATGTAAAAGCTGGTGTGTATAATGAAATTGTGAATGTGGCCAAGGAGATGACCCATGTCACAATTATTGGAGATGGTCCTACAAAGACTAGATTCACTGGTAATTTAAACTACGTCGATGGTGTCCAAACTTACAACACTGCTACCTTCGCTGTTAATGGTGCCAATTTCATGGCCAAGGATGTTGGATTTGAAAACACAGCAGGGTCCGAGAAACACCAAGCAGTAGCACTTCGAGTAACAGCAGACCAAGCTGTGTTTTATAATTGCCAAATGGACGGGTTCCAAGACACTCTTTATGCCCAATCCCAACGCCAATTCTACCGTGATTGCACCATTAGTGGCACCATCGACTTTATCTTTGGAGACGCCTTTGGAATGTTCCAAAACTGCAAACTGGTTGTGAGAAAACCCTTAGACAACCAACAGTGCATGGTGACGGCCGGTGGCAGAACCAAAGTTGACAGTCTTAGTGCCCTTGTGTTCCAAAGTTGCCACTTCACAGGGGAACCCCAAGTAGCTAACTTGAAACCCAAGATAGCATACCTTGGAAGGCCATGGAAGACATACTCTAAGGTGGTGATCATTGACTCTCAAATTGACAACATCTTTTTACCAGAAGGGTACATGGCATGGATGGGAAGTGCATTCAAGGACACATGTAcatattatgaatataataacaaGGGCCCTAGTGCTGATACATCATTTAGAGTTAAATGGCCAGGTGTTAAGACCATAACCTCTGCTGAAGCAACTAATTATTATCCTGGGAGGTTCTTTGAACTTGCTAATTCAACTGAACGTGATGCTTGGATTGTTGATGCTAGATATAAACTTGCATGTGAATATAGAGATATGGGCGGACATAACAATGACCATGAACAACAAAGAAGGCTTGCCATTCTTAGTATCTCTTCAATCCTCCTTGTGGCTATGGTGCCTGCGGCAATGGCTGTTGGTTTAAAACATGGAAGTGaaactaaaagagaaaagaatgacTTTAATATCTTAAACATTCCAAAGAGCAGTGGAGGCATGCTTTGCCAATTAACCCAGTACCAAGAAATCTGTAAGAAAAGCCTTGGGAATGAATTTTTCGTAACCACAGACCCAAAGAAGCTCATCAAAGCTGGGTTCAATGCCACGGTGGTGGAACTTTTAAACCACATAAACAACTCCACCCTTTATCGTGAGTTGGCCACAGATGACATGACAAGACAAGCTATGGATATTTGTACAGAAGTATTGGACTATGCGGTTGATGGTGTTATTAAATCTACTGAGATATTGGACAAGTTTGAATTTAACAAGTTGAATGAATATGTTTATGACCTCAAGGTTTGGCTCACGGGGAGTATTTCTCATCAACAAACTTGCTTGGAAGGTTTTGAGGATAAAGGAACACAGGTTGGTGAGACAATGGCTAAGGTTATGAATGCCTCTTTGGAGCTTAGTAGCAATGCGTTGGATATGACCAATATGATCTCTCACTTACTCAAGGGTCTTAACCTAAATAAATTTGGCAATAGGAGACTTCTCTCTGAGGAAGTAACACTTACGGATGGTTTCCTTTCGTGGGTGAATGAAGGGCAACGACGTTTTCTCCAGGCTTTTGGAAGTATTAAGCCCAATTCAATTGTGGCCCAAGATGGGTCCGGCCAATTTAAGACACTCACTGAAGCTCTTAAGACTGTTCCCCCTAAGAATGCTAAAACTTTTGTGATTTATGTCAAGGCTGGTGTGTATAAAGAAAATGTGAATGTCACCAAGGACATGACCCATGTCACAATTATTGGAGATGGTCCTACAAAGACTAAATTCACTGGCAATTTAAACTACGTTGATGGTGTCCCAACTTTCAACACTGCTACCTTTAGTGTTAATGGTGCCAACTTCATGGCCAAGGATGTTGGATTTGAAAACACAGCAGGGTCTGAGAAACAACAAGCAGTGGCACTTCTAGTCACAGCAGACCAATCTGTGTTCTATAATTGCCAAATAGACGGGTTCCAAGACACCCTTTATGCCCAATCCCAACGCCAATTCTACCGTGATTGTACCATCAGTGGCACTATCGACTTTATCTTTGGGGACGCCTTTGGAATGTTCCAAAACTGCACACTAATTGTAAGACCACCCTTACACGGACAACGGTGCATGGTGACAGCTGGTGGCAGAACCAAAGCTGATAGTCCCAGTGCCCTTGTGTTCCAAAGCTGCCACTTTACAGGGGAACCCCAAGTGGCTAGTGCAGAGCCTAAGATAGCATTCCTTGGAAGGCCATGGAGGCCATACTCTAAGGTGGTGATCATGGACTCTCAAATTGAGAATGTCTTTTTACTAGAAGGGTTCGAGGCATGGATGGGAAATGCATTCAAGGACACATGTACATATTATGAGTATAATAACAAAGGCCCTGGTGCTGACACATCACGTAGAGTTAAATGGCCAGGTGTTAAGACCATAACCTCTGATGAAGTAGCTAGTTATTATCCAGGGAAGTTCTTTGAACTCACTAATTCAACTGAACGTGATGCTTGGATTGTTAATGCTGGGATACCCTACTCTCTTGGCCCTATGAATGCCCAAAGTCCTACAACACTGGCCCAAAGTCCTATAGGGTGA 3498 0.4214 MGEHNNGHEQRRKFAILGISSILLVAMVAAVAVSLNHGSGTKGEEGNDHIYSAQRNIDMLCQSTEYPETCKKSLRQASNKTTDTKELIKAAINATAVELLNHINNSTLYRELAKDNMTKQAMDICKEVFDYAVDGIHKSAETLDKFEFNKLSEFVYDLKVWLTGSLSHQQTCLDGFENTTTKAGETMAKVMNTSLELSSNALDMINMISSLFKDLNQSTIGNKRLLSEEATLMDGFPSWVNEGQRHLLQSARLGSIKPNLVVALDGTGQFKTLTDALKIVPPKNAQTFVIYVKAGVYNEIVNVAKEMTHVTIIGDGPTKTRFTGNLNYVDGVQTYNTATFAVNGANFMAKDVGFENTAGSEKHQAVALRVTADQAVFYNCQMDGFQDTLYAQSQRQFYRDCTISGTIDFIFGDAFGMFQNCKLVVRKPLDNQQCMVTAGGRTKVDSLSALVFQSCHFTGEPQVANLKPKIAYLGRPWKTYSKVVIIDSQIDNIFLPEGYMAWMGSAFKDTCTYYEYNNKGPSADTSFRVKWPGVKTITSAEATNYYPGRFFELANSTERDAWIVDARYKLACEYRDMGGHNNDHEQQRRLAILSISSILLVAMVPAAMAVGLKHGSETKREKNDFNILNIPKSSGGMLCQLTQYQEICKKSLGNEFFVTTDPKKLIKAGFNATVVELLNHINNSTLYRELATDDMTRQAMDICTEVLDYAVDGVIKSTEILDKFEFNKLNEYVYDLKVWLTGSISHQQTCLEGFEDKGTQVGETMAKVMNASLELSSNALDMTNMISHLLKGLNLNKFGNRRLLSEEVTLTDGFLSWVNEGQRRFLQAFGSIKPNSIVAQDGSGQFKTLTEALKTVPPKNAKTFVIYVKAGVYKENVNVTKDMTHVTIIGDGPTKTKFTGNLNYVDGVPTFNTATFSVNGANFMAKDVGFENTAGSEKQQAVALLVTADQSVFYNCQIDGFQDTLYAQSQRQFYRDCTISGTIDFIFGDAFGMFQNCTLIVRPPLHGQRCMVTAGGRTKADSPSALVFQSCHFTGEPQVASAEPKIAFLGRPWRPYSKVVIMDSQIENVFLLEGFEAWMGNAFKDTCTYYEYNNKGPGADTSRRVKWPGVKTITSDEVASYYPGKFFELTNSTERDAWIVNAGIPYSLGPMNAQSPTTLAQSPIG 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1304 1165 PANTHER PECTINESTERASE 8 566 - -
Ssu1g1304 1165 PANTHER PECTINESTERASE 583 1153 - -
Ssu1g1304 1165 TIGRFAM PME_inhib: pectinesterase inhibitor domain 638 786 IPR006501 GO:0004857
Ssu1g1304 1165 TIGRFAM PME_inhib: pectinesterase inhibitor domain 53 208 IPR006501 GO:0004857
Ssu1g1304 1165 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Ssu1g1304 1165 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Ssu1g1304 1165 Gene3D Invertase/pectin methylesterase inhibitor family protein 637 787 IPR035513 -
Ssu1g1304 1165 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 209 IPR035513 -
Ssu1g1304 1165 SMART PMEI_2 52 204 IPR006501 GO:0004857
Ssu1g1304 1165 SMART PMEI_2 630 782 IPR006501 GO:0004857
Ssu1g1304 1165 ProSitePatterns Pectinesterase signature 1. 860 879 IPR018040 -
Ssu1g1304 1165 PANTHER PECTINESTERASE 8 566 - -
Ssu1g1304 1165 CDD PMEI-like_3 638 787 - -
Ssu1g1304 1165 Pfam Plant invertase/pectin methylesterase inhibitor 638 782 IPR006501 GO:0004857
Ssu1g1304 1165 Pfam Plant invertase/pectin methylesterase inhibitor 57 204 IPR006501 GO:0004857
Ssu1g1304 1165 SUPERFAMILY Pectin lyase-like 257 551 IPR011050 -
Ssu1g1304 1165 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 209 IPR035513 -
Ssu1g1304 1165 SUPERFAMILY Pectin lyase-like 833 1126 IPR011050 -
Ssu1g1304 1165 Pfam Pectinesterase 259 551 IPR000070 GO:0030599|GO:0042545
Ssu1g1304 1165 Pfam Pectinesterase 836 1126 IPR000070 GO:0030599|GO:0042545
Ssu1g1304 1165 ProSitePatterns Pectinesterase signature 2. 979 988 IPR033131 -
Ssu1g1304 1165 Gene3D - 832 1151 IPR012334 -
Ssu1g1304 1165 Gene3D - 256 571 IPR012334 -
Ssu1g1304 1165 PANTHER PECTINESTERASE 583 1153 - -
Ssu1g1304 1165 CDD PMEI-like_3 60 210 - -
Ssu1g1304 1165 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 638 787 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1304 Ssu-Chr1 28843840 28870531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1304 6 552 Carbohydrate Esterase AT5G49180 46.320 9.11e-172 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1304 K01051 - gmx:100784682 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0344 6 5503375 5505672 Ssu1g1304 1 28843840 28870531 PCT