Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1291 ATGTGTGGAGGTGCTATCATTTCAGACTTCATTGGCGTGAAGCGTGGCCGCAAGCTCGCCGCTAAGGAACTCTGGTCCGAGCTCGACCCTTTCTCTGACCTCCTTGGCTTCGACACCACCACCGCCGCTACTTCCAAACACCAACCACCCCCGCCGAAAATTCCAGAAAAAAAAGCATgcgagaagaagaggaaaagcgTGGGTGCAGAGAAGGGTAACGGAGGGAAGAAGAGTGAGCGAGCTCGCAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGCAAGTGGGCCGCGGAGATAAGGGACCCACACAAGGGTGTCCGCGTCTGGCTCGGCACCTTCTCCACCGCCGAAGAAGCCGCCAAAGCCTACGACAGCGCCGCCAAACGCATCCGCGGCGACAAGGCCAAACTCAACTTCCCCGCCACCGCCACTCCGCCACCACCCTCCAAGAAACGCTGCCTCAGCCCCGACCTTACTGAACAAAGCAGCAGCTGCCAGTCCTCCGGAACACCGCCTTCCTCAGCCGCGCACGGCGGCGGAGGCCAAGAGGAACTCGACCTGCAACAACTTGAATGGTTCCTCGGCTTGGAGAATGAGCAGCAGCCTGTGCGCAGCGGCGTTGAGTGGGACAATAACTACATGGACGACCTGTGGATGCTTGACGACGTCGTTATGCCCAACCGTCACCTGGTTTACTAA 705 0.573 MCGGAIISDFIGVKRGRKLAAKELWSELDPFSDLLGFDTTTAATSKHQPPPPKIPEKKACEKKRKSVGAEKGNGGKKSERARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFSTAEEAAKAYDSAAKRIRGDKAKLNFPATATPPPPSKKRCLSPDLTEQSSSCQSSGTPPSSAAHGGGGQEELDLQQLEWFLGLENEQQPVRSGVEWDNNYMDDLWMLDDVVMPNRHLVY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1291 234 Gene3D AP2/ERF domain 85 144 IPR036955 GO:0003700|GO:0006355
Ssu1g1291 234 MobiDBLite consensus disorder prediction 41 87 - -
Ssu1g1291 234 MobiDBLite consensus disorder prediction 139 184 - -
Ssu1g1291 234 Pfam AP2 domain 85 134 IPR001471 GO:0003700|GO:0006355
Ssu1g1291 234 MobiDBLite consensus disorder prediction 51 86 - -
Ssu1g1291 234 SMART rav1_2 85 148 IPR001471 GO:0003700|GO:0006355
Ssu1g1291 234 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Ssu1g1291 234 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Ssu1g1291 234 PANTHER DNA-BINDING DOMAIN 1 164 IPR044808 GO:0003700|GO:0009873
Ssu1g1291 234 ProSiteProfiles AP2/ERF domain profile. 85 142 IPR001471 GO:0003700|GO:0006355
Ssu1g1291 234 MobiDBLite consensus disorder prediction 157 177 - -
Ssu1g1291 234 SUPERFAMILY DNA-binding domain 85 143 IPR016177 GO:0003677
Ssu1g1291 234 CDD AP2 86 141 IPR001471 GO:0003700|GO:0006355
Ssu1g1291 234 PANTHER EREBP TRANSCRIPTION FACTOR 1 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1291 Ssu-Chr1 28459045 28460921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1291 1 226 AP2-EREBP Transcription Factor Family AT3G16770 44.615 2.34e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu1g1291 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1291 K09286 - gmx:100817253 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1291 1 28459045 28460921 Ssu1g1291 1 28459045 28460921 ECH
Ssu6g0349 6 5554502 5556811 Ssu1g1291 1 28459045 28460921 PCT