Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1290 ATGGCGACGGAGAAGTTAATGTCCGGTGGCGGCCCACGCTACATCCAAATGAAACCGTCGCCTCCGCCGTCGCCGCCGTCCACGGCCGCCGAGGAGATGTCGTCGGTCCCGTCGTTCCGGCATAGCGGCGCCGAGGCCAATCGGATTTTCGACGAATTGCCGAAAGCCACCATCGTCTCCGTCTCTCGCCCCGACGCCAGCGACATCAGCCCCATGCAACTCTCTTACACCATTCAGGTTCAGTACAAACAGTTCAAGTGGGAGCTAAAGAAGAAAGCTCATCAAGTGTTTATTTTGCATTTCGCATTAAAGAAACGTGCCATTATTGAGGAAATCGTTGAGAAGCAAGAGCAGGTTAAAGAATGGCTTCAAAATCTAGGAATTGGAGAACACACTGCTATGGTGCAAGATGACGATGAAGCTGATGATGAAACTGTCCCGTTACATACTGATGAAACTCATGAAAGTGCCAAGGACAGAGATGTTCCATCTAGTGCTGCTCTTCCAATTATACGGCCAGCCTTGGGAAGACAGCATTCTATTGCAGACAGGGCAAAGAGAGCAATGCAAGGATATCTGAATCACTTTTTGGGAAATATCAGTATTGTGAACTCTCGTGAGGTTTGCAAGTTTTTGGAGGTATCAAAGTTATCTTTTTCACCTGAATATGGCCCTAAGCTGAAGGAAGAATATGTGATGGTGAAGCATCTGCCCAAAATTCTGAGGGATGATGATTCCAAAAAGTGTTGTTTGTCTGACTGTTTTAGTTGTTGTAATGACAACTGGCAAAAGGTATGGACTGTACTGAAACCTGGATTCTTGGCATTGCTAGCAGATCCTTTCGATACACAGCCTCTGGACATCATTGTTTTTGATGTGCTGCCTGCCTCAGATGGGAATGGGGATGGTCGTTTATCATTGGCAAGTGACATGAAGGAACGAAATCCTTTACGCCATTCATTCAAGGTGACTTGTGGAATCCAGAGCATCAGAATTAGAGTGAAAAGTAGTAGTAAAGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGGCTCAGGCCTCCTGAAGGCTGGTGTCATCCTCACCGTTATGGTTCATTTGCTCCTCCAAGAGGCTTAGTCGAAGATGGAAGTCAAGCCCAGTGGTTCATTGACGGGCGAGCAGCATTTGAGGCCATTGCTTCTTCGATTGAGGCTGCAAAATCAGAGATATTTATTTGTGGGTGGTGGCTGTGCCCAGAACTGTTTCTACGGCGACCTTTCCACACTCATGCTTCATCAAGGCTTGATAATTTGTTGGAAGCAAAAGCTAAGCAAGGGGTTCAGATTTACATTCTTCTCTACAAAGAGGTGGCTCTTGCTTTGAAAATCAACAGTGTTTATAGCAAGAAAAAACTTCTTAGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTCACATCATGAAAAACTTGTCATTATTGATAATCATATCTGCTTTATTGGAGGGCTGGATTTATGCTTTGGTCGTTATGACACATCTGCAGCATAAAGTGGGAGATTTCCCTCCTCTAATCTGGCCTGGAAAAGACTATTATAACCCAAGAGAGTCTGAACCAAATTCATGGGAAGATacaatgaaagatgaattggaACGTGAGAAATATCCTCGTATGCCTTGGCATGATGTTCATTGTGCCCTTTGGGGACCACCTTGCCGTGACATCGCTAGGCACTTTGTTCAGCGATGGAATTATGCTAAGAGGAGCAAAGCTCCATATGAGCAAGCAATACCATTACTTATGCCTCAGCATCACATGGTTATTCCACATTACTTGGGAAGAAGCAGAGAGATACAGATTGAAAGCGGGAACATTGACAATCACAGAGTCCTCAAGAGAGAAGATTCATTTTCCTCGTCTTCCCAAAACCAAGATATTCCTCTACTTTTGCCTCAGGAATCTGATGGGTTGGATACTCATGAAGGAGACCAAAAATTGAATGGGTTAAACTCCTTGCATCACATTGACAAGCCAAGAAGGATCAGCAGTGGTCTTCCATTCTCATTCCGGAAGGCCAAAATTGTTGCAGTTGGTCCAGATACACCAATGAAGGGCTTTGTATATGATCTAGATTCTGAGCATGATCGTGAGAAAATGTCTCTGGATAGAGTGGCTCATGTCAATTTACAAATTACAGATCCAGAATGGTGGGAAACACAAGAACGGGGTGACCAGGGAGGTTTTGCTGATGAGTCAGGACAAGTTGGTCCTCTTGCTTCCTGCCGTTGCCAAGTTATTAGGAGCGTGAGTCAATGGTCTGCTGGAACAAGTCAAACTGAAGAGAGCATCCACAGTACTTATTGCTCTCTTATTGAGAAAGCTGAATACTTCATCTATATTGAGAATCAGTTTTTTATCTCAGGTCTTTCTGGAGATGAGATGATACGGAATCGTGTGTTAGAAGCTTTATATCAACGGATTATGCGAGCTTACAATGAGAAAAAATCTTTCAGGGTTATAATTGTCATACCTCTCCTGCCTGGCTTCCAGGGTGGCCTTGATGATAGTGGTGCAGCATCTGTGAGAGCCATAATGCATTGGCAGTATCGAACCATTTGCAGAGGGCAGAATTCTATCTTGCATAATCTTTATGAACTTCTTGGTTCTAAAATACATGATTACATCTCTTTTTACGGCCTAAGGTCTTATGGTAGACTCTCTAATGGTGGCCCTGTGGCAACCAGTCAGGTGTATGTTCACAGTAAAATCATGATTGTTGATGATTGTATAAGTTTAATTGGATCTGCTAACATTAATGATAGGAGCTTACTTGGCTCCAGAGATTCTGAGATTGGTGTAGTTATAGAAGACAAAGAGTTGATTGGTTCTTTTATGGATGGAAAGCCTTGGAAAGCAGGAAAGTTTTCCTTGACTCTCCGACTGTCATTATGGTCTGAGCACTTGGGTCTCCCTACAGGAGAGGTCAATCAAATAATGGACCCAGTTGTTGAATCTACTTATAAGGATATTTGGATGGCAACAGCaaagACAAATACTACTATTTATCAGGATGTCTTTTCTTGCGTACCTAATGATCTGATACACACCAGACTTGCTTTCAGACAAAGTGTGgctttttggaaagaaaaaattggTCACACGACCATTGATTTAGGAATAGCCCCAGAAAAATTAGAATCATATCATGATGGAGGCATTAAGAACACCGATCCGTTGGAGAGATTAGCATCAGTGAGGGGTCATCTTGTCTCTTTTCCCTTGGAGTTCATGTGTCAAGAAAGTCTAAGACCTGCTTTTAATGAAAGCGAATACTACGCTGCTCAAGTTTTCCATTGA 3357 0.4281 MATEKLMSGGGPRYIQMKPSPPPSPPSTAAEEMSSVPSFRHSGAEANRIFDELPKATIVSVSRPDASDISPMQLSYTIQVQYKQFKWELKKKAHQVFILHFALKKRAIIEEIVEKQEQVKEWLQNLGIGEHTAMVQDDDEADDETVPLHTDETHESAKDRDVPSSAALPIIRPALGRQHSIADRAKRAMQGYLNHFLGNISIVNSREVCKFLEVSKLSFSPEYGPKLKEEYVMVKHLPKILRDDDSKKCCLSDCFSCCNDNWQKVWTVLKPGFLALLADPFDTQPLDIIVFDVLPASDGNGDGRLSLASDMKERNPLRHSFKVTCGIQSIRIRVKSSSKVKDWVAAINDAGLRPPEGWCHPHRYGSFAPPRGLVEDGSQAQWFIDGRAAFEAIASSIEAAKSEIFICGWWLCPELFLRRPFHTHASSRLDNLLEAKAKQGVQIYILLYKEVALALKINSVYSKKKLLSIHENVRVLRYPDHFSTGHIMKNLSLLIIISALLEGWIYALVVMTHLQHKVGDFPPLIWPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRSKAPYEQAIPLLMPQHHMVIPHYLGRSREIQIESGNIDNHRVLKREDSFSSSSQNQDIPLLLPQESDGLDTHEGDQKLNGLNSLHHIDKPRRISSGLPFSFRKAKIVAVGPDTPMKGFVYDLDSEHDREKMSLDRVAHVNLQITDPEWWETQERGDQGGFADESGQVGPLASCRCQVIRSVSQWSAGTSQTEESIHSTYCSLIEKAEYFIYIENQFFISGLSGDEMIRNRVLEALYQRIMRAYNEKKSFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYELLGSKIHDYISFYGLRSYGRLSNGGPVATSQVYVHSKIMIVDDCISLIGSANINDRSLLGSRDSEIGVVIEDKELIGSFMDGKPWKAGKFSLTLRLSLWSEHLGLPTGEVNQIMDPVVESTYKDIWMATAKTNTTIYQDVFSCVPNDLIHTRLAFRQSVAFWKEKIGHTTIDLGIAPEKLESYHDGGIKNTDPLERLASVRGHLVSFPLEFMCQESLRPAFNESEYYAAQVFH 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1290 1118 CDD PH_PLD 203 350 - -
Ssu1g1290 1118 Gene3D Endonuclease Chain A 371 490 - -
Ssu1g1290 1118 SMART pld_4 915 942 IPR001736 GO:0003824
Ssu1g1290 1118 PIRSF PLD_euk 26 489 IPR016555 GO:0004630|GO:0006654|GO:0048017
Ssu1g1290 1118 PIRSF PLD_euk 615 1118 IPR016555 GO:0004630|GO:0006654|GO:0048017
Ssu1g1290 1118 PIRSF PLD_euk 516 621 IPR016555 GO:0004630|GO:0006654|GO:0048017
Ssu1g1290 1118 Pfam PLD-like domain 788 962 IPR025202 -
Ssu1g1290 1118 SUPERFAMILY Phospholipase D/nuclease 338 603 - -
Ssu1g1290 1118 Gene3D - 255 352 IPR011993 -
Ssu1g1290 1118 Gene3D Endonuclease Chain A 531 605 - -
Ssu1g1290 1118 MobiDBLite consensus disorder prediction 1 38 - -
Ssu1g1290 1118 CDD PLDc_vPLD1_2_yPLD_like_2 775 959 - -
Ssu1g1290 1118 Gene3D Endonuclease Chain A 740 975 - -
Ssu1g1290 1118 MobiDBLite consensus disorder prediction 634 661 - -
Ssu1g1290 1118 PANTHER PHOSPHOLIPASE D 39 1115 IPR015679 -
Ssu1g1290 1118 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 915 942 IPR001736 GO:0003824
Ssu1g1290 1118 MobiDBLite consensus disorder prediction 147 161 - -
Ssu1g1290 1118 SUPERFAMILY PH domain-like 258 350 - -
Ssu1g1290 1118 SUPERFAMILY Phospholipase D/nuclease 755 966 - -
Ssu1g1290 1118 PANTHER PHOSPHOLIPASE 39 1115 - -
Ssu1g1290 1118 MobiDBLite consensus disorder prediction 138 162 - -
Ssu1g1290 1118 Coils Coil 105 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1290 Ssu-Chr1 28355485 28376890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1290 1 999 Phospholipase D Gene Family (Wang group) AT3G16785 70.437 0.0 1328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1290 K01115 - gmx:100780514 2083.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1290 1 28355485 28376890 Ssu1g1290 1 28355485 28376890 ECH