Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1288 ATGGAAGCAGTCCTACATAAGACTAGTGCTGCCATTGACCAAGATCTAAAGCAGCATACTGGAATTGATTCCTTTCAAACTGGTACTACCGCTTTGACAATTATCAAACAGGGTGAACATCTCATTATAGCAAATGTTGGTGCCTCTAGAGCTGTCTTGGCAACCACTTCTGAGGATGGCACCTTGACTTCTCTTCAGCTTCCCACTGACTTGAAGCCAAATTTACCAAAGGAGGCAGAACGCATAATTCAATCTAGAGGACGAGTATTTTGTTTGGAAGATGAACCAGAAGTGTATAGGGTTTGGATGCCAAATGGTAAGACCCCACGACTAGCAATATCTAGAGCATTTGGTGACTACTGTGTAAAGGATTTTGGACTAATCTCTGTGCCAGATGTGACACAAAGAAAACTGACCACCAGGGATGAATTTGTCATCTTGGCAACAGATGGGGTATGGGATGTTATTTCCAACCAAGAAGCAGTGAAAATTGTTGGCTCAACGCCACATAAGGAAAAAGCAGCTCAAAGACTCGTGAAATGTGCCATGCATGAATGGAAACGTAAGAGAAGAGGCATTGCTATTGATGTTATACCAGCTATTTGCCTCTTCTTTCACTCTCACCCCTCTCATCAACTCCCTACCACTAAAATTGTCCAATAA 663 0.4253 MEAVLHKTSAAIDQDLKQHTGIDSFQTGTTALTIIKQGEHLIIANVGASRAVLATTSEDGTLTSLQLPTDLKPNLPKEAERIIQSRGRVFCLEDEPEVYRVWMPNGKTPRLAISRAFGDYCVKDFGLISVPDVTQRKLTTRDEFVILATDGVWDVISNQEAVKIVGSTPHKEKAAQRLVKCAMHEWKRKRRGIAIDVIPAICLFFHSHPSHQLPTTKIVQ 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1288 220 ProSiteProfiles PPM-type phosphatase domain profile. 1 205 IPR001932 -
Ssu1g1288 220 PANTHER PROTEIN PHOSPHATASE 2C 41-RELATED 7 216 - -
Ssu1g1288 220 SMART PP2C_4 4 203 IPR001932 -
Ssu1g1288 220 CDD PP2Cc 2 205 IPR001932 -
Ssu1g1288 220 Pfam Protein phosphatase 2C 3 183 IPR001932 -
Ssu1g1288 220 Gene3D - 1 207 IPR036457 -
Ssu1g1288 220 PANTHER ALPHABET, ISOFORM E-RELATED 7 216 - -
Ssu1g1288 220 SUPERFAMILY PP2C-like 3 184 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1288 Ssu-Chr1 28349649 28352373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1288 7 206 PP2C-type Phosphatase Gene Family AT3G05640 64.500 1.26e-95 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1288 - - gmx:100817397 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1288 1 28349649 28352373 Ssu1g1288 1 28349649 28352373 ECH