Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1263 ATGGGAGTTGAAAAAGAAGGGACGAAAGGTGGAGGAGGTTATGTTGGTGGTTTTTTCCAGTTGTTTGACTGGACCTCAAAATCCCGTAAGAAATTATTTGCAGCCAAGTCAGATTTATCAGAGCCTTTAAAACAGGGAAGAAAAGTCAATTACAATGTGGCAATGACACAGCCCTCCTATCTGgttgatgaagatgaaaatgGAGTAGGGGCAAGTGTTAGAGGAAGTTGTGATCATAGTTATGCTTCTTCTGTTACAGATGATGAATCATGTGGAACAAGGGCCCCTAGTGTTGTTGCCAGGCTTATGGGATTAGATTTCCTGCCTCCTTCCAGTTTTTGTGATCCTTATTCTACCCCATATTTTGATACCCTATCCCTTCAAGACGCTCAGTACTTCAAGAAAAACCTTGGTCACCAGCATGACCGTCAGACCCCATATTCTGGAAAGCTGGTTGAAAAGGTTGAGGGCTCATCTAGGAACTTCATGGTTGAAAAGGTTGAGGGCTCTTCTAGGAACTTCATGGAGCCAAAGCCGCAAAAGGCCATTACCAGGCCAATTGAGAAGTTCCAAACAGAAGTATTGCCTCCAAAATCAGCTAAATCAATTCCTGTTACACACCATAAACTTTTGTCCCCTATTAAGAATCCTGGCTTTGTTCCAACCAATAATGCTGCTTATATAATGGAGGCTGCAGCAAGAATTATTGAGCCTGGATCCCAAGCTAGTACCAAGGCTAAGACACCTCTGGTAGCACCATCAACACCATTGAGAGTTAGAGATCTTAAAGATAAGGTGGAGACTTCACAAAAAGGAGCTCTAATTGGGCCATCCTCTGTGACCTCTAGAACTCGAGatctaaaagagaaaagagaaatttcTCAAAGAACAAACAGGCTTTCAGAATCTTCTCAAAGATCAGTTGAGTCAAATGTTGCCAAGTATCTAAAAGGACAATCTTTGAACAGAAGCTGGAATGGTTCTGTGGATTCACAGAACCATTCCATCAAATCTCCTACACACGAGGAAGAAGATTCGTCTTTGAAGAATAAGGGGAAGTCCATATCACTTGCAATCCAAGCAAAGGTGAACGTACAAAGAAGGGAAGGTTTGAGTTTGAGTGGTGGCAGAAGTTTGATGGGCCAGAAAGAGCATCCTGACGTTAAATCCAACCAACCAATGAAGGCAAATAATGTTCAGAAAAATTTGCTTAAGAAATCTTCTAGTCAGAATTCATCTGGTGCTCTCAGACAGAATAATCTGAAACAGAATTATTcaattgacaaagacaaattaCCATCAAAGCCATTGGTTACCAATTCACACAGTAGGAAAGTTCTGACCGGGGATTCCTCTTATGGACGTCATAGAAGCTCTAATAATAAATCCATTGCAAAATCTAAAGTTGGATCCAGAAAGTCAGCCACGGAGGTGACAGATAGTGAAAAGGAAGTCTTATATACCAGCACAAACAATTTTCCTAGAAAGAAAAGGTCTACAGACAAGGACTGGAATGATAGGGTTGTGGATAATTTGTTCATTGAAAAATCTCAGAAGCCTGTTAAGTCTAACCTAGTGAgtaataaacaaaatagttGGGCTGAAGAAGTCAAAAAGAAAGACATGGATGTAGTTTCCTTCACATTTACCACACCATTAACAAGAAGCAATCCAGGTTTTGAGACATCTGGACAAGCTGGCCAGAATACTAATGGTCTTTCCTTGGATCAACGCATTAAAAGGGTGTTGATCGACTCAGACAATACAAGGTCTCCAATAGGATACAATGTGATTGGTGGTGATGCCTTAGGTATCCTTTTGGAACAGAAGTTGAGGGAATTAACACGTTTGGAAACCACTTGTCATGACTCTTCTAAAGTGAGGCAACCTGCTATTACTGCACCAAAGTCAGATGATCAAGCAACTGGCCTTAATGTAGTTAACCTCAATCCGAGGTTGGAACAGAAGAAAGACCAAGATGTGTTATTTACAGACAAGTTAAGCAGTTATGATTCAGACATCTCCTTTACTGGTCCTTCTGAATTATCATTGAAACATAACTCATGGATTGATGAGATGGAAGCACATTTACTCAATTGCCGACACCCAAGTCCAATCTCTGTTCTTGAGCCTTCTTTTTCAGTTGAAAGCTGTGAATCTTCATTGAGCACAGATTTTACTAGTACAGAAGGAAGCAAGTTGTGCTCATCTGTTCAAACTCAAGAAGTTCATGGCTTAAATTTTTCAAGGAAGTTCTATCCTTGTGAATCTGATACAGAGTTATCTGATTCGGCTTCTTCAACATCAGCTGGGAACACAATGAAGAAGCACACAAGTACATTTTCTGTCATGAAGTTTGGAATCTCAAGTACATGGGAATTGGACTATGTGAAAGATATATTGTGTAATGTTGAGTTGATGTATATGGACTTTTCCCTTGGCCGATCTCATGAGGTTATAAACTCTCATCAATACAACCAGTTGGAAGGCCGCAAGGGAGGGTTTAAGCGCAATGACGAGTCTCGTATAAGAAGGAAAGTTACATTTGATTGTGTGAGTGAATGTCTGGACTTGAGATGCAGGCGTTATGTAGGGGGAGGATACAAAATGTGGAGCAAAGGGTTTGAAatggtgaaaagaaaagaatggttGGCAGAAGATGTGTACAAGGAGATCACAGGTTGGAGAGGAATGGGAGATTCAATGGTGGATGAGCTTGTGGACAAGGACATGAGCAGCCAATATGGAAGATGGCTAGATTATGAGGTTGATGCTTTTGAACTTGGATCAGAGGTTGTGGaccaaatatttaattctttggTTGATGATGTTGTCAATGAAATCTTGCCATTGTAA 2856 0.3936 MGVEKEGTKGGGGYVGGFFQLFDWTSKSRKKLFAAKSDLSEPLKQGRKVNYNVAMTQPSYLVDEDENGVGASVRGSCDHSYASSVTDDESCGTRAPSVVARLMGLDFLPPSSFCDPYSTPYFDTLSLQDAQYFKKNLGHQHDRQTPYSGKLVEKVEGSSRNFMVEKVEGSSRNFMEPKPQKAITRPIEKFQTEVLPPKSAKSIPVTHHKLLSPIKNPGFVPTNNAAYIMEAAARIIEPGSQASTKAKTPLVAPSTPLRVRDLKDKVETSQKGALIGPSSVTSRTRDLKEKREISQRTNRLSESSQRSVESNVAKYLKGQSLNRSWNGSVDSQNHSIKSPTHEEEDSSLKNKGKSISLAIQAKVNVQRREGLSLSGGRSLMGQKEHPDVKSNQPMKANNVQKNLLKKSSSQNSSGALRQNNLKQNYSIDKDKLPSKPLVTNSHSRKVLTGDSSYGRHRSSNNKSIAKSKVGSRKSATEVTDSEKEVLYTSTNNFPRKKRSTDKDWNDRVVDNLFIEKSQKPVKSNLVSNKQNSWAEEVKKKDMDVVSFTFTTPLTRSNPGFETSGQAGQNTNGLSLDQRIKRVLIDSDNTRSPIGYNVIGGDALGILLEQKLRELTRLETTCHDSSKVRQPAITAPKSDDQATGLNVVNLNPRLEQKKDQDVLFTDKLSSYDSDISFTGPSELSLKHNSWIDEMEAHLLNCRHPSPISVLEPSFSVESCESSLSTDFTSTEGSKLCSSVQTQEVHGLNFSRKFYPCESDTELSDSASSTSAGNTMKKHTSTFSVMKFGISSTWELDYVKDILCNVELMYMDFSLGRSHEVINSHQYNQLEGRKGGFKRNDESRIRRKVTFDCVSECLDLRCRRYVGGGYKMWSKGFEMVKRKEWLAEDVYKEITGWRGMGDSMVDELVDKDMSSQYGRWLDYEVDAFELGSEVVDQIFNSLVDDVVNEILPL 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1263 951 PANTHER EXPRESSED PROTEIN 269 949 - -
Ssu1g1263 951 MobiDBLite consensus disorder prediction 406 427 - -
Ssu1g1263 951 Pfam Domain of unknown function (DUF4378) 793 943 IPR025486 -
Ssu1g1263 951 MobiDBLite consensus disorder prediction 263 351 - -
Ssu1g1263 951 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 271 - -
Ssu1g1263 951 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 269 949 - -
Ssu1g1263 951 MobiDBLite consensus disorder prediction 283 297 - -
Ssu1g1263 951 MobiDBLite consensus disorder prediction 367 394 - -
Ssu1g1263 951 PANTHER EXPRESSED PROTEIN 1 271 - -
Ssu1g1263 951 MobiDBLite consensus disorder prediction 336 350 - -
Ssu1g1263 951 MobiDBLite consensus disorder prediction 406 482 - -
Ssu1g1263 951 Pfam DUF761-associated sequence motif 83 112 IPR032795 -
Ssu1g1263 951 MobiDBLite consensus disorder prediction 436 472 - -
Ssu1g1263 951 MobiDBLite consensus disorder prediction 298 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1263 Ssu-Chr1 27919571 27923665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1263 16 949 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 30.206 1.87e-91 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1263 - - gmx:102669513 1560.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1263 1 27919571 27923665 Ssu1g1263 1 27919571 27923665 ECH
Ssu6g0376 6 5980900 5985042 Ssu1g1263 1 27919571 27923665 PCT