Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1262 ATGGGAAGATATCCTTGCTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAAATCTTGACCGATTACGTCCAAGAAAATGGTGAAGGATCATGGAAAACCTTGCCCAAGAATGcagGTTTGTTGAGGTGTGGGAAGAGTTGTCGACTGAGGTGGATCAACTATTTGAGAGCGGACGTGAAGAGAGGCAACATCACTCCTGAGGAAGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAATAGGTGGTCTATAATAGCAGGACATTTACCAGGACGAACTGACAACGAGATAAAGAACTATTGGAACTCTCACTTGAGGAGAAAGATCTATTGCTTCATGAGATCTTTAAATGAGTCTCTGCCACCCATTGACATGGCTGCTGTAAACGCTGCTACATCCAAGAGAAGAGGTCGCGGGTCAAGAAACAAGCCATCCATGGAAGAGGAAAAGAGCACGGCTTTGAGCCAAAACTCCTTTGAGTCAATGCCCAGTTGTAATAGAGAAAAAGCTGAAGAAATTTCCATGATGGATGTTCATTATGAAACGGAGGGCAATACAAGTAGCACAGTTGCATCATACCCCAGTCTTGAAGGCTTGGGACCATATCAACATTTGTCTAATGACGAAATTATGAGACTTAGTCACGTGTTTGAAAATGGGGGACTTGTAAATCCAAGTGGTAATGTAACCCTTAAGGAAGAGCCTAATGGAAATGACTATGAGCAAATGCACGTGGATATAATGGGAACAACTCAAGAGAGCAAGAGTGGTGTTTGGAGCTCATCAAATGGGGAGAGTGGAGAATGGTACCCCAATTGTTCATCAGTGAATTCTACCATTGATTATCAGTGGTCCGATTGGGACATGACAGGTAGTGTTCAATCCAATAATCAGTGGAACCTTTCTGAAGAAGATCAAAAGATGACTTGCTTGTGGGATACCGGCATTGGTGAAGTAAATGGTTTTCATCCGTAA 996 0.4277 MGRYPCCEKVGLKKGRWTAEEDKILTDYVQENGEGSWKTLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPEEEEIIVKLHAVLGNRWSIIAGHLPGRTDNEIKNYWNSHLRRKIYCFMRSLNESLPPIDMAAVNAATSKRRGRGSRNKPSMEEEKSTALSQNSFESMPSCNREKAEEISMMDVHYETEGNTSSTVASYPSLEGLGPYQHLSNDEIMRLSHVFENGGLVNPSGNVTLKEEPNGNDYEQMHVDIMGTTQESKSGVWSSSNGESGEWYPNCSSVNSTIDYQWSDWDMTGSVQSNNQWNLSEEDQKMTCLWDTGIGEVNGFHP 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1262 331 CDD SANT 16 61 IPR001005 -
Ssu1g1262 331 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 293 - -
Ssu1g1262 331 Gene3D - 71 116 - -
Ssu1g1262 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu1g1262 331 PANTHER MYB TRANSCRIPTION FACTOR 2 293 - -
Ssu1g1262 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu1g1262 331 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu1g1262 331 CDD SANT 71 112 IPR001005 -
Ssu1g1262 331 MobiDBLite consensus disorder prediction 156 171 - -
Ssu1g1262 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu1g1262 331 MobiDBLite consensus disorder prediction 138 174 - -
Ssu1g1262 331 Gene3D - 13 66 - -
Ssu1g1262 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu1g1262 331 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu1g1262 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu1g1262 331 SMART sant 13 63 IPR001005 -
Ssu1g1262 331 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1262 Ssu-Chr1 27912182 27918091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1262 1 310 MYB Transcription Factor Family AT5G49330 44.101 7.30e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu1g1262 Myb_DNA-binding 6.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1262 K09422 - gmx:100819041 580.096