Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1257 ATGGCACACAACTTAACGGGGCAGCTTGTGGGTTCAGAGATACATGGGTTTCACACGTTGCAGGATCTGGACGTTAGTAACACTATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCCAATGAGATTCATGCCATACTCTGTAATCACAAATATTTCAAGATCAATGCCAAGCCAGTGCGTTTGCCCAAAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTCGGAACTTCAGAAAAGATGGGCAcaattggaaaaagaaaagtgatgGGAAAACTGTCAAAGAAGCCCATGAACACTTAAAAGTTGGCAATGAAGAAAGGATCCACGTATATTATGCACATGGCCAAGATAACCCAACCTTTGTTCGTAGATGTTATTGGTTGCTTGATAAGAGTTTGGAACACATAGTCCTTGTTCATTATCGTGAAACACAAGAGCCGCAATTGCAAGGTTCTCCTGTTACACCtgtaaattcaaattcaagttCTGTCTCTGATCCAGCTGCATCTTGGGTTCTATCAGAAGACTTAGATTCTGGGACGAACAGTGCTTACGCTGTTGAGCTTAATGACAATTTGACAGTCAAAAGTCATGAGCAGAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTTCTAATGTCAACACTTCTACTACATCTAATGGAGGCAATGTTCCATGTTCATATCAACAAAATCAAAGTTTACTGAGTGGAAGCTTTGGCAATGTATCCAGTAATCCTTCAGCAGAAATTCCTTCTTTTCCCGTTTCTGAGATCAATAGTGTTCCTTACAGTTTCCCAGAAAGTGTTAATCTTCTGAAAGATAGTGCTATATCTCTGGGTGGTGTTGACACCTTAGGCACTTTGGTCAATGAAGGCTTGCAAAGTCAGGACAACTTTGGAATGTGGATGAACAACATCATATCAGGTACACCATGTTCCATAGATGAGTCAGCTCTTGAAGCATCAATTTCTCCATCTGTTCATGAACCATATTTGTCGCTGGTGGCAGATAATCAGCAATCTTCTCTGCCAGAACAAGTATTTACTCTCACTGAGGTGTCCCCTGCATGGGCATCTTCCACAGAGAAAACAAAGGTCTTGGTAACtggatattttcataataactaTCTACACCTTGCAAAGTCCAGCCTACTGTGTGTCTGTGGTGATGTAAGTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGGTGCTGGGTATCACCCCATTCTCCTGGGTTTGTGAATCTCTATTTGAGCTTTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTATTTTGCATGATCCCACTGCTTCAATGGAGGAGAAATTCAACTGGAATGAGTTTCGACTTCAGACGAGGCTTGCTCATTTGCTCTTTGCTGCAGAAAAGAGCCTTAACATTTTCTCAAGTAAAGTATCGCCTAATGCACTGAAAGAGGCTAGAAGATTTTCGTCCAAAACATCATTTATCTCCAAAAGTTGGCAATACTTGATGAAGTCAATTGAAGACAAAACTACTCCATTTTCACAAGCAAAAGATGCCTTGTTTGAAATTGCtttgaaaaccaaattaaaGGAATGGCTTTTGGAACGAATTGTCTTTGGCAGCAAGATTACTGAATATGATGCGCAAGGCCAAGGTGTAATTCATTTGTGTGCAATGTTGGGATATAACTGGGcaatttccttattttcttgGTCAGGCTTGTCGCTGGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATTATGGAATGTATGATACATGGATACCCCACTTGTCTGAACAATTAGCCTTGCTACAACCACATTGa 1869 0.3959 MAHNLTGQLVGSEIHGFHTLQDLDVSNTMEEAKSRWLRPNEIHAILCNHKYFKINAKPVRLPKSGTIVLFDRKMLRNFRKDGHNWKKKSDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPTFVRRCYWLLDKSLEHIVLVHYRETQEPQLQGSPVTPVNSNSSSVSDPAASWVLSEDLDSGTNSAYAVELNDNLTVKSHEQRLHEINTLEWDDLVVSNVNTSTTSNGGNVPCSYQQNQSLLSGSFGNVSSNPSAEIPSFPVSEINSVPYSFPESVNLLKDSAISLGGVDTLGTLVNEGLQSQDNFGMWMNNIISGTPCSIDESALEASISPSVHEPYLSLVADNQQSSLPEQVFTLTEVSPAWASSTEKTKVLVTGYFHNNYLHLAKSSLLCVCGDVSVPVEIVQVGVYRCWVSPHSPGFVNLYLSFDGHKPISQVVNFEYRTPILHDPTASMEEKFNWNEFRLQTRLAHLLFAAEKSLNIFSSKVSPNALKEARRFSSKTSFISKSWQYLMKSIEDKTTPFSQAKDALFEIALKTKLKEWLLERIVFGSKITEYDAQGQGVIHLCAMLGYNWAISLFSWSGLSLDFRDKFGWTALHWAAYYGMYDTWIPHLSEQLALLQPH 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1257 622 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 604 - -
Ssu1g1257 622 Gene3D - 520 615 IPR036770 -
Ssu1g1257 622 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Ssu1g1257 622 Gene3D Immunoglobulins 349 445 IPR013783 -
Ssu1g1257 622 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 15 604 - -
Ssu1g1257 622 SUPERFAMILY E set domains 355 442 IPR014756 -
Ssu1g1257 622 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Ssu1g1257 622 SMART CG_1_2 29 146 IPR005559 GO:0003677
Ssu1g1257 622 SUPERFAMILY Ankyrin repeat 540 606 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1257 Ssu-Chr1 27772192 27780607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1257 1 603 CAMTA Transcription Factor Family AT4G16150 54.299 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1257 K21596 - gmx:100819198 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1257 1 27772192 27780607 Ssu1g1257 1 27772192 27780607 ECH
Ssu6g0385 6 6160514 6169768 Ssu1g1257 1 27772192 27780607 PCT