Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1256 ATGGTTGCAACTCTGTTGTCTTATGGGGCAAAGCCAAACTTGGTCACAGATCCTACTGCAGAAAATCCCGGTGGATGTACTGCTGCTGATCTTGCTTATATGAAGGGATGTGATGGCTTAGCTGCTTACCTTTCTGAGAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCACTGGAGACTAGCTCAACTGATCCAGTAAATTCTGAGAACCTTACTGAGGACCAACTGTACCTAAAGGAGACGTTGGCAGCTTACCGTACAGCTGCTGAGGCAGCAGCACGCATTCAAGTTGCATTTAGGGAGCATTCGCTAAAATTACGATCTATGGCGATTCTCAGCCCAGAGGATGAAGCCCGTCAAATAGTAGCAGCAATGAGGATTCAACATGCCTTTCGCAACTATGAGACAAGGAAAAGGATGGCAGCTGCTGCTCGGATTCAGCATAGATTCCGTACATGGAAGTACCGTAGAGAATTTCTGAACATACGGCGTCAGGctattaaaattcaaGCTGCTTTCAGGGGCTTTAAAGTGCGGAAGCAATATCGGAAAATCATATGGTCTGTTGGGGTGCTTGAGAAAGTGATCCTGCGTTGGCTTTTAAAGAGAAAAGGCTTCCGCGGTCTCCAGGTTAATCCTGCCCCAGATGAGGAGCAGGAAAGTGTTGCAGAGGAGGACTTCTTCCGAACTGGCCGGAAACAAGCCGAAGAACGTGTCGAGAGGTCTGTCGTACGCGTGCAGGCCATGTTCCGTTCTAAGAAAGCACAAGAAGAATATAGAAGGATGAAGCTGGCTCATAATCAAACAAAGCTGGAACTGGAATTAGAAGAATTCCTCAATTCTGAAGTTGACATGCCACCCAAGACATAG 894 0.4653 MVATLLSYGAKPNLVTDPTAENPGGCTAADLAYMKGCDGLAAYLSEKSLVEQFNDMSLAGNISGSLETSSTDPVNSENLTEDQLYLKETLAAYRTAAEAAARIQVAFREHSLKLRSMAILSPEDEARQIVAAMRIQHAFRNYETRKRMAAAARIQHRFRTWKYRREFLNIRRQAIKIQAAFRGFKVRKQYRKIIWSVGVLEKVILRWLLKRKGFRGLQVNPAPDEEQESVAEEDFFRTGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAHNQTKLELELEEFLNSEVDMPPKT 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1256 297 ProSiteProfiles IQ motif profile. 248 276 IPR000048 GO:0005515
Ssu1g1256 297 ProSiteProfiles IQ motif profile. 170 194 IPR000048 GO:0005515
Ssu1g1256 297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 197 IPR027417 -
Ssu1g1256 297 ProSiteProfiles IQ motif profile. 147 176 IPR000048 GO:0005515
Ssu1g1256 297 Pfam IQ calmodulin-binding motif 172 191 IPR000048 GO:0005515
Ssu1g1256 297 ProSiteProfiles IQ motif profile. 128 157 IPR000048 GO:0005515
Ssu1g1256 297 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 1 282 - -
Ssu1g1256 297 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 282 - -
Ssu1g1256 297 SMART iq_5 169 191 IPR000048 GO:0005515
Ssu1g1256 297 SMART iq_5 127 149 IPR000048 GO:0005515
Ssu1g1256 297 SMART iq_5 246 268 IPR000048 GO:0005515
Ssu1g1256 297 Gene3D - 148 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1256 Ssu-Chr1 27770230 27771938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1256 1 280 CAMTA Transcription Factor Family AT3G16940 63.604 2.63e-110 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1256 K21596 - gmx:100819198 485.723