Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1236 atgaagaaaaagaggatGTGGCACTTGTTGAGACCCTCTTGGCTTCTGCTGAGAAAGTTGGCCATCAACAGTTTGAACGTGCTAGCAAATTGCTTAGTCACTGTGAATCATTGTCTTGCAATACTGGGAGCCCCGTTAAGCGTATTGTTCATTACTTTGCTGAAGCACTTTGCCAGAGGATGGATAGAGAAACAGGAAGAGTTTCAGTCCAAGGATTTGCAAAAGAGGCAATCGTTTGATCCTCAAGTGGCATACAAGGAGCTAAACCCCACTATTGTTGCATTTTATGAAGACCTTCCCTTTTGTAAAGTTTCAGTGTTCACTGCAGTCCAAGCTATAATAGAAGATGTAGCTGAAGCAAAGAAGATTCACGTTATTGATCTTGAAATCAGAAACGGGGGGCAGTGGACTATCCTAATGCAAGCCCTTGAGTCAAGACATGAATGTCCAATTGAGCTTCTAAAGATAACCGCTATTGAAAGTGGAACCACTAGACACATAGTTGAGGACACCAGTAAGAGACTAAAGGATTTTGCTCAAGGTTTGAACATACCCTTCTCTTTCAACATAGTTATGGTATCAGACCTATTACATCTCAGAGAAGATCTTTTTGAGATTGATCCTGAGGAAATAATTGCAGTTTATTCTCTTTATGCACTTAGAACCAAGATTCAGCAATCAGACCAGCTAGAAACCATCATGAGAGTGATTAGAACCTTGAGTCCTAATGTAATGGTGGTAGCTGAAATTGAGGCAAACCACAACTCTACATCTTTTGTAAACCGGTTCATTGAGGCACTTTTCTTCTTCAGTGCATTCTTTGATTGTCTTGAGACTTGCATGAAACGAGATGAGAAGAACCGAATGATTATAGAATCACTGTACTTCGGCCATGGAATTAGGAATATTGTGGCAGAAGAAGGAGCAGAAAGAAAGACTCGGAATGTGAAGATTGATGTGTGGAGGGCCTTCTTCTCCCGCTTTGGAATGGTGGAGAAAGAATTGAGCACGTTGTCTTTATACCAAGCGGATTTGGTGGCTAAAAGATTTCCTTCTGGAAGTTTTTGCACGTTTGAAAAGAATGGGCATTGCCTTGTTATTGGGTGGAAAGGAACACCAATTAATTCTGTTTCTGTTTGGAAATTCCTTTGA 1152 0.4028 MKKKRMWHLLRPSWLLLRKLAINSLNVLANCLVTVNHCLAILGAPLSVLFITLLKHFARGWIEKQEEFQSKDLQKRQSFDPQVAYKELNPTIVAFYEDLPFCKVSVFTAVQAIIEDVAEAKKIHVIDLEIRNGGQWTILMQALESRHECPIELLKITAIESGTTRHIVEDTSKRLKDFAQGLNIPFSFNIVMVSDLLHLREDLFEIDPEEIIAVYSLYALRTKIQQSDQLETIMRVIRTLSPNVMVVAEIEANHNSTSFVNRFIEALFFFSAFFDCLETCMKRDEKNRMIIESLYFGHGIRNIVAEEGAERKTRNVKIDVWRAFFSRFGMVEKELSTLSLYQADLVAKRFPSGSFCTFEKNGHCLVIGWKGTPINSVSVWKFL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1236 383 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 69 381 IPR005202 -
Ssu1g1236 383 Pfam GRAS domain family 65 381 IPR005202 -
Ssu1g1236 383 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 69 381 - -
Ssu1g1236 383 ProSiteProfiles GRAS family profile. 15 381 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1236 Ssu-Chr1 27288269 27289420 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1236 95 382 GRAS Transcription Factor Family AT3G03450 34.021 3.75e-52 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu1g1236 GRAS 4e-80 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1236 - - gmx:100798926 525.013