Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1234 ATGGAAGACCACGTCAGTGAATTCAGTTTCAGTGCATTTGAGGACAATTTTAGTTCATCCAACGATATTTTCTGGGCTATTGAGGGACTGAATGAAGTGAAGAAGGTTCAATTTTCTGGTGCAGTTGACCCACTTTACTTTGATTTTGGGTTCTTCCCAGATGATCCATCAGAAGAAGGGTACCTTCTATCCACTAATCAACAAAAGTGTCACCAGCAACAATCATATCATGATTATGGACAATTGGATAACGTTCAGCTTGACATGGTCTCTCCACCACTTCAATTTGATGCACAATATCCAACCATGGTTCCGCTACGTGACCCAACAAAGGACAAGCCACACTCAACTACCCCTTTAGCCTCACTTGAGATCTTGAATAACTATGGCAAGGGCTTCAATCGGTTATGCAATGAAGACAAAACACTGCAGCCAGTTGATGATTTGTCTGTGGTCACAAATGATGTTATTTGGAGAAAGCTCTCAACAGAAGATGTCATGAGGATAGCAGGAACAAGGTTCATCCAATCATCATCTTCAGACTTAGAAGGTTTGCCATTCTTGGAAACTCacaattttggtttttctttctctGGACTCTCTGATGAAGAGAAAGAGGATGTGACCCTTGCTGAGTTCCTCTTGGCTTCTGCTGAGAAAGTTGGCCATCAACAATTTGAACACGCAAGCAAATTGCTAAGCCATTGCGAATCGTTGTCTTCCAACACTGGGAGCCCCGTTAAGCGTATTGTTCATTATTTTGCTGAAGCACTTCGCCAAAGGATAGATAGAGAAACAGGAAGAGTTTCGCCCAAGGATTTGCAAAAGGGACAGTCATTTGATCCTGAAGTGGCAGCCAAGGAACTTAACCCCACTATGGTTGCATTTTATGAACACCTTCCCTTTTGTAAAGTTTCAGTGTTCACTGCAGTCCAAGCTATAATAGAAGATGTAGCTGACGCAAAGAAGATTCATGTTATTGATCTCGAAATCAGAAAGGGGGGGCAGTGGACTATCCTAATGCAAGCCCTTGAGTCAAGACATGAATGTCCAATTGAGCTTCTAAAGATAACCGCTGTTGAAAGTGGAACCACAAAACATATTGTTGAGGACACTGGTAAGAGACTAAAGGATTTTGCTCAAGGTTTGAACATACCTTTCTCTTTCAACATAGTTATGGTATCAGACCTGTTGCATCTAGGTGAAGATCTTTTTGAGATTGATCCAGAGGAAGCAATTGCGGTTTATTCTCAGTATGCACTTAGAACCAAGATTCAACAATCTGATCAGCTTGAAACCATCATGAGAGTGATTAGAACCTTGAGTCCTACTGTGATGGTGGTAGCTGAAATTGAAGCAAACCACAACTCTACATCTTTTGTAAACCGTTTCATTGAGGCCCTTTTCTTCTTCAGTGCATTCTTTGATTGTCTTGAGACTTGCATGAAACGAGATGAGAAGAACCGAATGATTATTGAGTCACTGTACTTCAGTCATGGAATTAGGAATATTGTGGCAGAAGAAGGAGCAGAAAGAAAGACTCGGAACGTGAAGATTGATGTCTGGAGGGCCTTCTTCTCCCGCTTTGGAATGGTGGAGAAAGAATTGAGCACGTTGTCTTTATACCAAGCGGATTTGGTGGCTAAAAGATTTCCTTGGGGAAGTTTTTGCACATTTGATAAGATTGGGCATTGCCTTGTTATTGGGTGGAAAGGAACACCAATTAACTCTGTTTCTGTTTGGAAATTCCTTTGA 1755 0.4108 MEDHVSEFSFSAFEDNFSSSNDIFWAIEGLNEVKKVQFSGAVDPLYFDFGFFPDDPSEEGYLLSTNQQKCHQQQSYHDYGQLDNVQLDMVSPPLQFDAQYPTMVPLRDPTKDKPHSTTPLASLEILNNYGKGFNRLCNEDKTLQPVDDLSVVTNDVIWRKLSTEDVMRIAGTRFIQSSSSDLEGLPFLETHNFGFSFSGLSDEEKEDVTLAEFLLASAEKVGHQQFEHASKLLSHCESLSSNTGSPVKRIVHYFAEALRQRIDRETGRVSPKDLQKGQSFDPEVAAKELNPTMVAFYEHLPFCKVSVFTAVQAIIEDVADAKKIHVIDLEIRKGGQWTILMQALESRHECPIELLKITAVESGTTKHIVEDTGKRLKDFAQGLNIPFSFNIVMVSDLLHLGEDLFEIDPEEAIAVYSQYALRTKIQQSDQLETIMRVIRTLSPTVMVVAEIEANHNSTSFVNRFIEALFFFSAFFDCLETCMKRDEKNRMIIESLYFSHGIRNIVAEEGAERKTRNVKIDVWRAFFSRFGMVEKELSTLSLYQADLVAKRFPWGSFCTFDKIGHCLVIGWKGTPINSVSVWKFL 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1234 584 Pfam GRAS domain family 212 582 IPR005202 -
Ssu1g1234 584 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 33 582 - -
Ssu1g1234 584 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 33 582 IPR005202 -
Ssu1g1234 584 ProSiteProfiles GRAS family profile. 201 582 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1234 Ssu-Chr1 27281371 27283125 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1234 200 583 GRAS Transcription Factor Family AT3G03450 30.357 4.07e-55 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu1g1234 GRAS 1.5e-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1234 - - gmx:100818523 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1234 1 27281371 27283125 Ssu1g1234 1 27281371 27283125 ECH