Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1233 ATGGAAGACTTGTACCATGTCAGTGAATTCAGTTTCAGTGCAGTTGAGGACAATTTTGGTTCATCCAACGATATTTTCTGGGCTATTGAGGGACTGAATGAGGTGAAGAAGGTTCAATTTTCTGGTGCAGTTGACCCACTTCACTCTGATTTTGGGTTCTTCCCAGATGATCCACCAGAAGAAGGGTACCTTCTATCCACTAATCAACAAAAGTATCACCAGCAACAATCATATCATGATTATGGACAATTGGATAACCTTCAGTTTGACATGGTCTCTCCACCACTCCAATTTGATGCGCGATATCCAACCATGTTTCCACTATGTGTCCCAACAAAGGACCAGCCACACTCAACTACCCCTTTAGCCTCACTTGAGATCTTGAATAGCTATGGCACGGGCTTCAAGCGGTTATGCAATGAAGGCAAAACCCTGCAGCCAGTTGATGATTTGGCTGTAAATGAAGTTATTTGGAGAAAGCTCTCGACTGAAGATGTCATGAGGATAGCAGGAACAAGGTTCATccaatcatcatcatcttcagaGTCAGAATCTTTTCCTTTCTTGGAAACTCACCCTTTTGGCTTTTCTTTCTCTGGACTCTCCAACGAAGAAACAGAGGATGTGGCACTTACTGAGTCTCTCTTGGCTTCTGCTGAGAAAGTTGACCATCAACAGTTTGAACGTGCTAGCAAACTGCTAAGTCATTGTGAATCATTGTCTTCCGAAACTGGGAGCCCCATTAAGCGTATTGTTCATTATTTTGCTGAAGCACTTCGCCAGAGGATCGATAGAGAAACAGGAAGAGTTTCATCCAAGGATTTGCAAAAGGGGCAGTCACTTGATCCTGAAGTGGCAGCCAAGGAACTTAACCCCACTATTGTTGCTATTTATGAGGGGCTTCCCTTTTTTCAAATTGCTCTGTTCAATTCAGTTCAAACTATAATAGAAGATGTAGCTAAAGCAAAGAAGATTCACATTATCGATCTGGAAATCAGAAAGGGAGGGCAGTGGACTATCCTAATGCAAGCCCTCGAGTCAAGACATGAATGTCCAATTGAGCTTCTAAAGATAACCGCTATCGAAAGTGGAACCACAAAACATATAGTTGAGGACACTGGTAAGAGACTAAAGGATTTTGCTCAAGGTTTGAACATATCCTTCTCTTTCAACATAGTTATGGTATCAGACCTGTTGCATCTAGGTGAAGATCTTTTTGAGATTGATCCAGAGGAAGCAATTGCAGTTTATTCTCAGTATGCACTTAGAACCAAGATTCAACAATCTGATCAGCTTGAAACCATCATGAGAGTGATTAGAACCTTGAGTCCTAAAGTGATGGTGGTAGCTGAAATTGAAGCAAACCACAACTCTACATCTTTTGTAAACCGTTTCATTGAGgctcttttcttcttctgtgCATTCTTTGATTGTCTTGAGACTTGCATGAAAGGGGATGAGAAGAACCGAGTGATTATAGAATCATTATACTTCAGTCATGGAATTAGGAATATTGTGGCTGAAGAAGGAGCAGAAAGAAAGACTCGGAACGTGAAGATTGATGTCTGGAGGGCCTTCTTCTCCCGCTTTGGAATGGTGGAGAAAAAATTGAGCACGTTGTCTTTATACCAAGGGGATTTGGTGGCTAAAAGATTTCCTTGGGGAAGTTTTTGCACATTTGATAAGAATGGGTATTGCCTTGTTATTGGGTGGAAAGGAACACCAATTAACTCTCTTTCTGTCTGGAAATTTCTTTGA 1758 0.405 MEDLYHVSEFSFSAVEDNFGSSNDIFWAIEGLNEVKKVQFSGAVDPLHSDFGFFPDDPPEEGYLLSTNQQKYHQQQSYHDYGQLDNLQFDMVSPPLQFDARYPTMFPLCVPTKDQPHSTTPLASLEILNSYGTGFKRLCNEGKTLQPVDDLAVNEVIWRKLSTEDVMRIAGTRFIQSSSSSESESFPFLETHPFGFSFSGLSNEETEDVALTESLLASAEKVDHQQFERASKLLSHCESLSSETGSPIKRIVHYFAEALRQRIDRETGRVSSKDLQKGQSLDPEVAAKELNPTIVAIYEGLPFFQIALFNSVQTIIEDVAKAKKIHIIDLEIRKGGQWTILMQALESRHECPIELLKITAIESGTTKHIVEDTGKRLKDFAQGLNISFSFNIVMVSDLLHLGEDLFEIDPEEAIAVYSQYALRTKIQQSDQLETIMRVIRTLSPKVMVVAEIEANHNSTSFVNRFIEALFFFCAFFDCLETCMKGDEKNRVIIESLYFSHGIRNIVAEEGAERKTRNVKIDVWRAFFSRFGMVEKKLSTLSLYQGDLVAKRFPWGSFCTFDKNGYCLVIGWKGTPINSLSVWKFL 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1233 585 Pfam GRAS domain family 212 583 IPR005202 -
Ssu1g1233 585 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 35 583 - -
Ssu1g1233 585 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 35 583 IPR005202 -
Ssu1g1233 585 ProSiteProfiles GRAS family profile. 202 583 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1233 Ssu-Chr1 27270863 27272620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1233 201 584 GRAS Transcription Factor Family AT3G03450 29.082 1.86e-52 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu1g1233 GRAS 6.5e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1233 - - gmx:100818523 882.093