Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1232 ATGCTCACCACACACTGCACTCAAGTCCCCACCCAACTTGCCTTTGTGGGCTTAGGCCTTCTTCCTCTCACCTCAATCATGTTGGCCACCCTTTACCTTAGGCACACGTGCTTCCACAACTACGACATGGATCCATTAGCAAATGCCAAGGCTCGTGACTTGGACTATAACGTGGTCTTCTTGGCAGCACTTGTGGGCATGGACCAGAAGGAGAAAGCAAGAGTCATCAATCACTTAGCCAAATTCATGGCCCCAGGAGCTATTCTGTTGTTAAGGAGTGCCCATGGTGCTCGAGCCTTCCTCTATCCGGTGGTTGATCCTTCCTCTGATCTTAAAGGGTTTGAAGTTCTCTCAATTTTTCACCCAACTGATGAGGTTATTAATTCGTTTATTGTTGCATGCAAGTATTCGGTGAATCAAGGGATTTATTCACCAGTGTTGGCTAGCAAATGTTCTGGAGTTGAAGGCTTTAATCCCTTCAACCATGGGAACGTTATTGAGGAGTTGACCATTAATGAGCAAGCTTGA 528 0.464 MLTTHCTQVPTQLAFVGLGLLPLTSIMLATLYLRHTCFHNYDMDPLANAKARDLDYNVVFLAALVGMDQKEKARVINHLAKFMAPGAILLLRSAHGARAFLYPVVDPSSDLKGFEVLSIFHPTDEVINSFIVACKYSVNQGIYSPVLASKCSGVEGFNPFNHGNVIEELTINEQA 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1232 175 Pfam Nicotianamine synthase protein 1 54 IPR004298 GO:0030410|GO:0030418
Ssu1g1232 175 Pfam Nicotianamine synthase protein 55 138 IPR004298 GO:0030410|GO:0030418
Ssu1g1232 175 Gene3D Vaccinia Virus protein VP39 52 137 IPR029063 -
Ssu1g1232 175 Gene3D Vaccinia Virus protein VP39 2 51 IPR029063 -
Ssu1g1232 175 PANTHER NICOTIANAMINE SYNTHASE 3 55 175 IPR004298 GO:0030410|GO:0030418
Ssu1g1232 175 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 140 IPR004298 GO:0030410|GO:0030418
Ssu1g1232 175 PANTHER NICOTIANAMINE SYNTHASE 1 54 - -
Ssu1g1232 175 PANTHER NICOTIANAMINE SYNTHASE 55 175 - -
Ssu1g1232 175 PANTHER NICOTIANAMINE SYNTHASE 3 1 54 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1232 Ssu-Chr1 27236056 27236660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1232 1 170 Nicotianamine Synthase Gene Family AT5G56080 46.078 9.86e-51 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1232 K05953 - gmx:100814069 281.952