Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1228 ATGGCGTTTTGGTGGTCCTTGCTCGTCCTAGCACTCGCTTTCGCCATCTGCAAGTTCCTTCTCATTCTCATTCCTCCCAAGGTTCCTCCCATCGATGTTGACGCTTCCGACGTGTTGGACGATGGGAAGCTGGCGCAGGAGAACAGCTTCATATACGTGCCTCCGAGGGGAATGGCGAAGCAATCGAAAGTTCAGTGCTATGAGCCTGCTACCATGAAATATTTGGGATATTTTCCTGCATTGACGCCGGATGAGGTCAAGGAGCACGTGGAAAGAGTACAGAAGGCACAAAAAATGTGGGCGAAGACGAGCTTCAAGCAAAGACGCCAGTTTTTGCGTATACTTttgaagtatataattaaacatcaaGCACTTATATGCGAAATATCTTCACGTGATACTGGAAAGACAATGGTAGATGCCTCTTTAGGAGAAATAATGACAACGTGTGAGAAGATAAATTGGCTACTGTCAGAGGGTGAGAAGTGGCTAAAGCCTGAGTACAGATCCTCTGGAAGAGCAATGCTTCATAAGAGAGCTAAAGTAGAATTTCACCCCCTTGGTGTTATTGGTGCCATTGTGTCATGGAACTATCCTTTCCACAATATTTTTAACCCTATGTTGGCAGCAGTTTTTTCTGGAAATGGCATTGTGATTAAGATTTCTGAACATGCAAGTTGGTCTGGATGCTTTTACTTGCGAATCATCCAATCAGCCCTTGCTGCCATAGGAGCTCCGGAGGACCTTGTTGAGGTGATAACGGGGTTTGCTGAAACAGGAGAAGCACTGGTCTCTTCTgctgataaaattatttttgttggatcCCCTGGGGTTGGCAAGATGATAATGAGAAATGCTGCTGAGACACTCATACCAGTTACACTAGAGCTTGGTGGAAAAGATGCATTTATTGTTTGTGAAGATGTAGATGTGGACCATGTTGCTCAAATTGCTGTCAGGGCTGTTCTTCAGTCAAGCGGGCAAAACTGTGCTGGGGCTGAGCGATTTTATGTTCACAGGAAAATTTATGCATCCTTCGTCAGTAAAGTTACCAAAGTAATAAAATCCGTTACAGCTGGCCCACCACTTGCTGGAAAGTTTGATATGGGAGCTTTATGTATGCATGAGCATTCTGAAAAACTTGTAGGGCTTATTAATGATGCTTTAGACAAAGGAGCTGAAATTGTTGCGCGTGGAAGTTATGGACATATAGGTGAAGATGCAGTTGATCAATATTTCCCCCCTACAGTGATTGTGAATGTGAATCACTCAATGAGATTGATGCAAGAAGAGGCATTTGGACCAATCATGCCAATAATGAAATTTAGCTCTGATGAAGAGGCCGTCAGGCTTGCAAATGATTCAAAATATGGACTTGGCTGTGCTGTTTTCTCAGGCAGTCAGAGCCGTGCTAGGGAGATAGCTTCCCAGATACATTGTGGGGTTGCTGCAGTTAATGATTTTGCAACAACGTACATGTGTcagTCACTGCCATTTGGGGGCGTGAAACACAGTGGATTTGGACGATTTGGTGGTGTTGAAGGTTTGCGAGCATGCTGCCTTGTAAAATCTGTTGTTGAAGATCGATGGTGGCCATTCATCAAAACCAAGATACCGAAGCCTATTCAGTATCCTGTAGCAGAAAATGGATTTGAGTTTCAGGAGTCGCTTGTTGAAGCACTATACGGACTCAGCGTATGGGACCGTTTGCAAGCATGGGTTAACGTGTTGAAAATGCTTACTGAGCAGAACTCTACAAGTGGCAGCAGAAAAATGAAGCATGACTAA 1788 0.4334 MAFWWSLLVLALAFAICKFLLILIPPKVPPIDVDASDVLDDGKLAQENSFIYVPPRGMAKQSKVQCYEPATMKYLGYFPALTPDEVKEHVERVQKAQKMWAKTSFKQRRQFLRILLKYIIKHQALICEISSRDTGKTMVDASLGEIMTTCEKINWLLSEGEKWLKPEYRSSGRAMLHKRAKVEFHPLGVIGAIVSWNYPFHNIFNPMLAAVFSGNGIVIKISEHASWSGCFYLRIIQSALAAIGAPEDLVEVITGFAETGEALVSSADKIIFVGSPGVGKMIMRNAAETLIPVTLELGGKDAFIVCEDVDVDHVAQIAVRAVLQSSGQNCAGAERFYVHRKIYASFVSKVTKVIKSVTAGPPLAGKFDMGALCMHEHSEKLVGLINDALDKGAEIVARGSYGHIGEDAVDQYFPPTVIVNVNHSMRLMQEEAFGPIMPIMKFSSDEEAVRLANDSKYGLGCAVFSGSQSRAREIASQIHCGVAAVNDFATTYMCQSLPFGGVKHSGFGRFGGVEGLRACCLVKSVVEDRWWPFIKTKIPKPIQYPVAENGFEFQESLVEALYGLSVWDRLQAWVNVLKMLTEQNSTSGSRKMKHD 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1228 595 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 295 302 IPR029510 GO:0016491
Ssu1g1228 595 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 63 523 IPR016162 GO:0016491
Ssu1g1228 595 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 323 334 IPR016160 GO:0016491
Ssu1g1228 595 PANTHER ALDEHYDE DEHYDROGENASE-LIKE PROTEIN YHR039C-RELATED 1 560 - -
Ssu1g1228 595 Pfam Aldehyde dehydrogenase family 60 525 IPR015590 GO:0016491
Ssu1g1228 595 SUPERFAMILY ALDH-like 60 530 IPR016161 GO:0016491
Ssu1g1228 595 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 303 498 IPR016163 GO:0016620
Ssu1g1228 595 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 1 560 - -
Ssu1g1228 595 CDD ALDH_F15-22 67 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1228 Ssu-Chr1 27163835 27171499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1228 1 594 Aldehyde Dehydrogenase Gene Family AT3G66658 78.356 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1228 - - gmx:100816920 1095.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1228 1 27163835 27171499 Ssu1g1228 1 27163835 27171499 ECH