Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1227 ATGATTTCCATTCCCACAAACTCACTTGCTTCATTTAGCCAAAGAGAAGAAACGGTTGGCAGTACAGGGAGCAAGGTTCTTATAAGAGagtataatgaaaataaagatgTTAAAATGGTGAGAAAGCTAGAGAGGAACTGTGAGATTGGGACTAAAAAGGTGGTCTCCATTTTAACCAACATGATGGGTGATCCTTTATCTAGGATTAGGTTTTTCCCCCTTCACGTTATGCTGGTAGCCGAGCTTCTTGAGAGCAGGGAGCTAGTTGGAGTGGTTCGGGGAATCATTAAGAATGTGGGGACTCTTTCTGGATCATTCTTGAAGATGGGTTGTATCCTAGGCCTCAGAGTCTCTCCTACTTACAGGAGAAAGGGGGTTGCACTAAGACTTGTCACCGCAGTTGAAGAATGGATGGTGAGAAATGGAGCTGAGTATGCATTCCTAGCCACTGAAAAGAATAATGATGCATCTAAAAACCTATTTACCATCAAATGCAACTATGTGAATCTGACCTCACTTGTCATATTTGTCCAACCAACTAGTTCCCTTACAAAGCATATTTCTAGggatataaaaatagagaaagtgGACATAGATCTAGCAATTTCGTTATACAGAAGAACCTTGAGGACCAAAGATTTGTATCCATTAGATATGGACGTTATTCTGAAGGAGAAGCTCAGCCTAGGCACATGGGTATGTTATTACAAAGAAGAGGGCTGGCTCAACTTGCTGAGCAAGGTAAATAATGAAGAAGATCTTGTTAGCAACGAAACCTCAAGCTCATGGGTCATATTTAGCATATGGAACACTTGTGAAGCTTATAAGCTTCAAGTTAGAAAATCTCAACTACTAAGGTTTCTTCTTACAACCTTAAATCATGCAAGAGAGAAAGTTTTCCCTTGTCTCAAAATGTCGGTGAGTGACTCACTTTGTAGACCTTTTGGGTTTCTCTTCCTCTATGGAATCCATGGAGAGGGAGAGAACCCTGGAGAGCTCATGGAATCCATATGGAGGTTCACATCAAGAGTGGGAGAAGGTATGAGGGACTGTAGGGTGGTTATAGCTGAGTTAGGGTTTGGTGATCCACTTGCCAACCATGTTCCTCAAACAGCCTCTATGTCATGTATTGATGATCTATGGTACACAAAGAAGCTTTCAAGCCACTGTGATGAAAATATTGATGAACTGTTGATGAAGGGACAGGTGGGAAATGTGTTTGTTGATCCTAGAGATTTTTAG 1242 0.4026 MISIPTNSLASFSQREETVGSTGSKVLIREYNENKDVKMVRKLERNCEIGTKKVVSILTNMMGDPLSRIRFFPLHVMLVAELLESRELVGVVRGIIKNVGTLSGSFLKMGCILGLRVSPTYRRKGVALRLVTAVEEWMVRNGAEYAFLATEKNNDASKNLFTIKCNYVNLTSLVIFVQPTSSLTKHISRDIKIEKVDIDLAISLYRRTLRTKDLYPLDMDVILKEKLSLGTWVCYYKEEGWLNLLSKVNNEEDLVSNETSSSWVIFSIWNTCEAYKLQVRKSQLLRFLLTTLNHAREKVFPCLKMSVSDSLCRPFGFLFLYGIHGEGENPGELMESIWRFTSRVGEGMRDCRVVIAELGFGDPLANHVPQTASMSCIDDLWYTKKLSSHCDENIDELLMKGQVGNVFVDPRDF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1227 413 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 22 413 - -
Ssu1g1227 413 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 21 161 IPR016181 -
Ssu1g1227 413 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 26 228 IPR000182 GO:0016407
Ssu1g1227 413 CDD NAT_SF 77 148 - -
Ssu1g1227 413 Pfam Acetyltransferase (GNAT) family 79 166 IPR000182 GO:0016407
Ssu1g1227 413 Gene3D - 28 179 - -
Ssu1g1227 413 PANTHER N-ACETYLTRANSFERASE HLS1-LIKE ISOFORM X1-RELATED 22 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1227 Ssu-Chr1 27142323 27144103 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Ssu1g1227 Acetyltransf_1 4.1e-13 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1227 - - gmx:100808694 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1227 1 27142323 27144103 Ssu1g1227 1 27142323 27144103 ECH
Ssu6g0407 6 6381377 6382974 Ssu1g1227 1 27142323 27144103 PCT