Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1220 ATGGCCTCAGCAAGCGGAGCGGCGAACTCGTCGGTCCCGCAGCAGCAAGTTCAGAGTTCGCGAGCCAAGCTGAGCCACCAGAACCTGGACTCGATGAGCAAGGCCATCGCGCAGTACACGGAAGACGCCAGACTCCACGCCGTCTTCGAGCAGTCGGGCGAGTCCGGGAGGTCCTTCGACTACTCCCAGACGGTCCGCGTCACGGCGGAGTCCGTCCCCGAGCAGCAGATAACGGCGTACCTCCTCAGAATCCAGCGCGGCGGCTTCATCCAGCCGTTCGGCTCCACGATCGCCGTCGACGAGCCCTCCTTCCGCATCCTCGCCTACTCCGACAACGCCCGCGACATGCTCGGCATTACGCCGCAGGCCGTGCCCTCCCTAGACGACGACGGCGGGCTGGAAGCCGCCTTCGCGCTCGGCGCCGACGTCCGCTCCCTCTTCACCCACTCCAGCGCGCTGCTCCTCGAGAAGGCCTTCGCCGCGCGCGAGATCAGCCTCACGAACCCTGTCTGGATCCACTCCAGGACCTCCGGGAAGCCCTTCTACGGCATCCTCCACCGGATTGACGTCGGAATCGTCATCGATTTGGAGCCGGCGGGTTCCTCCGACCCCGCGCTCTCCATCGCCGGCGCGGTCCAGTCGCAGAAGCTCGCCGTCCGCGCGATTTCGCAGCTCCAGTCTCTCCCCGGCGGGGACGTGAAGCTTCTCTGCGACGCCGTCGTCGAGAGTGTGAGAGAATTGACAGGGTACGATAGGGTTATGGTTTACAAGTTCCACGAGGACGAGCACGGGGAGGTTGTTGCCGAGAGCAAGAGGCCCGATTTGGAGCCTTACATTGGTTTGCATTATCCCGCCACTGATATCCCTCAGGCTTCGAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTCACGCTTTGCCCGTGAGGGTGGTTCAAGATGAGGCTCTTGTGCAGCCTCTGTGTTTGGTGGGGTCTACTTTGCGTGCGCCTCATGGGTGCCACGCTCAGTATATGGCTAACATGGGGTCCATCGCGTCGTTGGTGATGGCTGTTATTATTAATGGGAATGATGAGGAGGGTGTGGGTGTGGGTGTTGGTGGCCGGAGTTCGATGAGGTTGTGGGGGCTTGTTGTTTGCCATCATACTTCTGCTAGGTGTATTCCTTTTCCATTGAGGTATGCTTGTGAGTTTCTGATGCAGGCGTTTGGGCTGCAGTTGAACATGGAGCTTCAGTTGGCGGCGCAGTCGTTGGAGAAGCGGGTTTTGAGGACGCAGACTCTGTTGTGTGATATGCTGCTTAGGGACTCGCCTACTGGCATTGTTACTCAGAGTCCTAGTATCATGGACTTGGTGAAGTGTGATGGGGCTGCTCTTTACTACCAGGGGAACTATTATCCGTTGGGGGTGACTCCAACTGAGGCTCAGATAAGGGATATAATTGAGTGGTTGTTGGCCTGCCATGGGGATTCCACCGGTTTGAGTACTGATAGTCTGGCTGATGCTGGGTATCCTGGGGCTGCCTCGCTTGGAGACGAGGTTTGTGGGATGGCGGTTGCTTATATCACGGAGAAGGATTTTCTCCTCTGGTTCAGGTCGCACACTGCGAAGGAGATCAAGTGGGGCGGTGCAAAGCATCATCCGGAGGACAAGGATGATGGGCAGAGGATGCACCCCCGTTCTTCCTTCAAGGCGTTTTTGGAAGTGGTGAAAAGCCGGAGCTTGCCGTGGGAGAATGCGGAAATGGACGCGATTCACTCTCTGCAGCTTATTCTGCGTGACTCGTTTAGAGATGCTGAGCGTAGCAATTCTAAGGCTGTTGTGGATCCCCATGTGGGGGAACTAGAGTTGCAAGGGGTGGATGAACTGAGTTCTGTGGCCAGAGAGATGGTTAGATTGATAGAAACGGCTACTGCTCCTATATTTGCTGTTGATGTTGATGGCCACATAAACGGGTGGAATGGAAAGGTTTCGGAATTGACAGGACTCCCGGTTGAGGAGGCTATGGGAAAGTCCTTGGTTCGCGATCTTGTGTTTAAGGAGTATGAAGAAACTGTGGACAAGCTTCTTTCTCGTGCTTTAAAAGGTGAAGAAGATAAGAATGTTGAGATAAAAATGAGGACGTTTGGCCCTGAACATCAAAATAAGGCTGTTTTTGTAGTGGTGAATGCTTGCTCCAGCAAGGATTATGCAAATAATATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAAATGGTGATGGACAAATTCATCAACATACAAGGTGACTACAAGGCTATTGTACATAGTCCAAATCCTTTGATCCCTCCCATTTTTGCATCGGACGATAACACATGTTGCTTAGAGTGGAACACTGCCATGGAAAAGCTTACTGGTTGGGGCCGTGCGGATGTCATTGGGAAAATGTTGGTGGGAGAAGTTTTTGGTAGTTGCTGTCAGTTGAAGGGTTCAGATGCAATAACAAAGTTCATGATTGTCTTACACAATGCGCTTGGTGGGCAAGATACAGATAAATTCCCTTTTTCGTTTCTTGATCGGCATGGAAAGTATGTGCAAACTTTCCTGACTGCAAATAAGAGGGTTAACATGGATGGTCAGATTGTTGGGGCTTTTTGCTTCTTGCAAATTGTGAGCCCTGAACTTCAACAGGCTCTGAAAGCACAGAGACAACAAGAGAAGAATTCCTTTGCTAGGATGAAAGAGTTGGCTTACATTTGTCAAGGAGTAAAGAACCCATTGAGTGGCATAAGCTTTACAAACTCTCTTTTGGAGGCTACAGGCTTGACCGATGAGCAAAAGTTGTTTCTTGAGACTAGTACTGCTTGTGAGAAGCAAATGTTAAAGATAATACACGACATTGATCTTGAAAGCATCGAGGATGGGTCCCTGGCACTTGAAAAGGGGGAATTCGTGCTGGGAAATGTCATAAATGCAGTTGTTAGCCAAGTGATGTTACtgttaagagaaagaaatttaGAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTTTATGGTGATCAATTGAGGCTTCAACAAGTGTTGGCTGATTTCTTATTGAATATAGTGCGCTATGCACCATCTCCTGATGGCTGGGTAGAGATTCATTTACATCCAAGAATAAAGCAAATCTCGGATGGGCTCACTCTTCTTCAAGCTGAATTTAGaaTGATATGTCCCGGTGAAGGTCTTCCTCCTGAATTGATTCAAGACATGTTCAATAACAGTCGGTGGGTGACTCAAGAAGGTTTAGGGCTGAGCATGAGCAGGAAGATTCTAAAGCTAATGAACGGTGAAGTCCAATATATCAGGGAGGCAGAACGGTGTtacttttttgttcttcttgAACTACCTCTGACGCGGAGAAGCTCTAAAAAGTGTTAA 3414 0.5032 MASASGAANSSVPQQQVQSSRAKLSHQNLDSMSKAIAQYTEDARLHAVFEQSGESGRSFDYSQTVRVTAESVPEQQITAYLLRIQRGGFIQPFGSTIAVDEPSFRILAYSDNARDMLGITPQAVPSLDDDGGLEAAFALGADVRSLFTHSSALLLEKAFAAREISLTNPVWIHSRTSGKPFYGILHRIDVGIVIDLEPAGSSDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDAVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHALPVRVVQDEALVQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEEGVGVGVGGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGNYYPLGVTPTEAQIRDIIEWLLACHGDSTGLSTDSLADAGYPGAASLGDEVCGMAVAYITEKDFLLWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAERSNSKAVVDPHVGELELQGVDELSSVAREMVRLIETATAPIFAVDVDGHINGWNGKVSELTGLPVEEAMGKSLVRDLVFKEYEETVDKLLSRALKGEEDKNVEIKMRTFGPEHQNKAVFVVVNACSSKDYANNIVGVCFVGQDVTGQKMVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNTAMEKLTGWGRADVIGKMLVGEVFGSCCQLKGSDAITKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQTFLTANKRVNMDGQIVGAFCFLQIVSPELQQALKAQRQQEKNSFARMKELAYICQGVKNPLSGISFTNSLLEATGLTDEQKLFLETSTACEKQMLKIIHDIDLESIEDGSLALEKGEFVLGNVINAVVSQVMLLLRERNLELIRDIPEEIKTLAVYGDQLRLQQVLADFLLNIVRYAPSPDGWVEIHLHPRIKQISDGLTLLQAEFRMICPGEGLPPELIQDMFNNSRWVTQEGLGLSMSRKILKLMNGEVQYIREAERCYFFVLLELPLTRRSSKKC 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1220 1137 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 979 1127 IPR036890 -
Ssu1g1220 1137 SUPERFAMILY GAF domain-like 422 599 - -
Ssu1g1220 1137 ProSitePatterns Phytochrome chromophore attachment site signature. 332 341 IPR013516 -
Ssu1g1220 1137 Gene3D PAS domain 624 757 - -
Ssu1g1220 1137 SMART pas_2 762 832 IPR000014 -
Ssu1g1220 1137 SMART pas_2 631 698 IPR000014 -
Ssu1g1220 1137 SMART pas_2 83 151 IPR000014 -
Ssu1g1220 1137 ProSiteProfiles PAS repeat profile. 629 700 IPR000014 -
Ssu1g1220 1137 SMART HisKA_10 904 968 IPR003661 GO:0000155|GO:0007165
Ssu1g1220 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 84 200 IPR035965 -
Ssu1g1220 1137 Pfam PAS fold 632 747 IPR013767 GO:0006355
Ssu1g1220 1137 Pfam PAS fold 763 882 IPR013767 GO:0006355
Ssu1g1220 1137 Gene3D PAS domain 776 886 - -
Ssu1g1220 1137 SMART gaf_1 232 424 IPR003018 GO:0005515
Ssu1g1220 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 636 744 IPR035965 -
Ssu1g1220 1137 Gene3D - 419 592 IPR043150 -
Ssu1g1220 1137 Gene3D PAS domain 84 335 - -
Ssu1g1220 1137 PRINTS Phytochrome signature 247 266 IPR001294 GO:0006355|GO:0009584
Ssu1g1220 1137 PRINTS Phytochrome signature 332 353 IPR001294 GO:0006355|GO:0009584
Ssu1g1220 1137 PRINTS Phytochrome signature 529 548 IPR001294 GO:0006355|GO:0009584
Ssu1g1220 1137 PRINTS Phytochrome signature 651 666 IPR001294 GO:0006355|GO:0009584
Ssu1g1220 1137 PRINTS Phytochrome signature 632 648 IPR001294 GO:0006355|GO:0009584
Ssu1g1220 1137 PRINTS Phytochrome signature 147 169 IPR001294 GO:0006355|GO:0009584
Ssu1g1220 1137 PRINTS Phytochrome signature 562 580 IPR001294 GO:0006355|GO:0009584
Ssu1g1220 1137 PRINTS Phytochrome signature 725 742 IPR001294 GO:0006355|GO:0009584
Ssu1g1220 1137 PRINTS Phytochrome signature 444 464 IPR001294 GO:0006355|GO:0009584
Ssu1g1220 1137 PRINTS Phytochrome signature 745 765 IPR001294 GO:0006355|GO:0009584
Ssu1g1220 1137 PANTHER TWO-COMPONENT HISTIDINE KINASE 8 1132 - -
Ssu1g1220 1137 PANTHER PHYTOCHROME 8 1132 - -
Ssu1g1220 1137 TIGRFAM sensory_box: PAS domain S-box protein 636 753 IPR000014 -
Ssu1g1220 1137 Gene3D - 213 575 IPR029016 -
Ssu1g1220 1137 CDD HisKA 904 960 IPR003661 GO:0000155|GO:0007165
Ssu1g1220 1137 MobiDBLite consensus disorder prediction 1 26 - -
Ssu1g1220 1137 Gene3D - 887 967 - -
Ssu1g1220 1137 Pfam Phytochrome region 427 600 IPR013515 GO:0006355|GO:0009584
Ssu1g1220 1137 CDD PAS 774 882 IPR000014 -
Ssu1g1220 1137 PIRSF Phytochrome_conventional 10 1136 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Ssu1g1220 1137 ProSiteProfiles Histidine kinase domain profile. 911 1131 IPR005467 -
Ssu1g1220 1137 SUPERFAMILY PYP-like sensor domain (PAS domain) 777 880 IPR035965 -
Ssu1g1220 1137 CDD HATPase_Phy-like 1015 1127 IPR044767 -
Ssu1g1220 1137 Pfam GAF domain 233 414 IPR003018 GO:0005515
Ssu1g1220 1137 Pfam PAS fold 79 199 IPR013654 GO:0006355
Ssu1g1220 1137 Pfam His Kinase A (phospho-acceptor) domain 908 968 IPR003661 GO:0000155|GO:0007165
Ssu1g1220 1137 CDD PAS 640 747 IPR000014 -
Ssu1g1220 1137 SMART HKATPase_4 1016 1131 IPR003594 -
Ssu1g1220 1137 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1016 1129 IPR003594 -
Ssu1g1220 1137 Gene3D - 968 1133 IPR036890 -
Ssu1g1220 1137 SUPERFAMILY GAF domain-like 212 411 - -
Ssu1g1220 1137 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 232 404 IPR016132 -
Ssu1g1220 1137 ProSiteProfiles PAS repeat profile. 763 815 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1220 Ssu-Chr1 27031192 27037390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1220 2 1129 Histidine Kinase Gene Family AT4G16250 73.037 0.0 1752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1220 K12121 - gmx:100799831 2067.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1220 1 27031192 27037390 Ssu1g1220 1 27031192 27037390 ECH