Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1219 ATGGGAACcccagaagaagaagaagagattctCAAGAAGATAGAACGCCTAGAAGCTGGTCACGCTCACCTCAAGCAAGAAATGTCCAACCTCAAGCTCCTCCAACACAACAGGTCTCGTTCCAGGTTGGCTTCTGCCACGTGTCACAAacccccttcttcttcttcttcttcttctctgcATCATAGTGAAAGCAAGTATCTCAACATCTTGCAGTCAATGGGCCACTCTGTTCATGTGTTAGATCTTCAATGTCGTATCATATACTGGAACCCTAGTGCTGAAAATCTGTACGGTTATGCAGCAGAGGAAGTTCTTGGGCAGGATGGGATTGAGGTGCTTGTGGATCCCAGGGATTTTGCATTAGCCAATGATGTATTCAACCATGTCAAAATGGGAGAGAGTTGGAGAGGCCAGTTCCCTGTCAAGAATAAGAAAGGGGATAAGTTCTATGTTGTGGCAACCAATACACCTTTCTATGATGATGATGGAAGCTTGGTTGGGGTTATTTGTGTCTCCTGTGATTTACGGCCCTTTCTTGAAACCGGAATTCCCTTTTCAGACGGGAAGAATGTGGAACCGGATTCAGGTTCTGACGGTTGTAGGAGTAGCATTTTGGATAAACTTGGCCTTGACTCTCAGCTGCCACTTCAAGTTGCTCTGGCttcgaaaatttcaaatttgGCGTCAAAAGTGAGTAACAAAGTGAAGTCTAGAATGCGGACGGGAGAAAATAATGTCAACCGTGAAGGTGGAAGTGGAGAAGGTCATCATTCTAAGCACAGTTTCTCAGACTGTGTTCTTTCTGATCAGAGAGAGGATGGTAATTCAAGTGGAGCTAGCACACCCAGAGGAGAGGTGCTCAAATCTCCTTTTGCTGTATCTTCTCATGTTGAAGTGAAATCCCAAGGGAAAACTATGAGAGACTTGGGTGATCAGAGTGAAGGAAAACCTATTCACAAGATCATAACTTCAAAGGCTGAACCATGGATTCAAAAGAAAACATCATCACGGCCATGGAGAGCAAACAATCAGGAAGGATCCGAGGCAAGGAATGTTTGTGTTGCTTGGCCTTGGTTGCTGGGTGATCAAGAAAATGAGTCAATTAATCAGAAGAATATTTCTTCTGGGTTGAAGCCAGAAAGCCAGGCAGGTGAAAGTAATCAACCTGTTAATAATGAGGCTTCAGGTTCCTGGTCCTCCTTTTATAATGTTAACAGCACAAGTAGTACTAGCAGCTGTGGGAGTGGCAGCAGTTGTGCAGCTAATAATAAAGTGGACGTTGACTTTGATTGCTTGGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACCAATTGGGCAAGGTTCTTGTGGAACTGTATATCATGCTCTGTGGTATGGATCGGATGTTGCTGTCAAGGTCTTCTCAAAGCTAGAATACTCAGATGATGTGATACTGTCCTTCAGACAAGAGGTATCCCTCATGAAAAGACTTCGTCATCCAAATATTATTCTCTTTATGGGAGCTGTGACTTCACCTCAACGTCTATGCATCGTAACAGAGTTTCTCCCACGAGGAAGCTTGTTTCATTTGCTTCAAAGAAACACATCCAAACTTGAGTGGAGACGGCGAGTTCATATGGCCTTAGATATTGCACGAGGTGTAAATTATCTTCATCATTGCAACCCCCCTATCATCCATCGAGATTTAAAGTCTTCAAATATTCTAGTTGATAAGAATTGGACTGTGAAGGTCGGTGATTTTGGTCTTTCGTGTCTTAAGCATGAAACATATCTCACTACAAAGACAGGAAAGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACTGTCAGATGAGAAGTCTGATGTTTACAGCTTTGGGGTGATATTGTGGGAACTTGCAACTGAAAAGATCCCTTGGGAGACTCTCAACCCAATGCAGGTTATTGGAGCTGTAGGGTTTATGAACCATCGGCTAGAAATTCCAGAAGATGTTGATCCACAGTGGGCTTCTATAATTGAGACTTGCTGGCACAGTGATCCAGCTTGCCGACCAACATCCCAGGAACTGGTGGAAAGGCTTAGAGAACTGCAGAGACAATACGCAATTCAATTCCAGGCAGCTCGTTCTGCTGTTGAGGAAGGCACTCAAAAGGAGTTCTAG 2163 0.4263 MGTPEEEEEILKKIERLEAGHAHLKQEMSNLKLLQHNRSRSRLASATCHKPPSSSSSSSLHHSESKYLNILQSMGHSVHVLDLQCRIIYWNPSAENLYGYAAEEVLGQDGIEVLVDPRDFALANDVFNHVKMGESWRGQFPVKNKKGDKFYVVATNTPFYDDDGSLVGVICVSCDLRPFLETGIPFSDGKNVEPDSGSDGCRSSILDKLGLDSQLPLQVALASKISNLASKVSNKVKSRMRTGENNVNREGGSGEGHHSKHSFSDCVLSDQREDGNSSGASTPRGEVLKSPFAVSSHVEVKSQGKTMRDLGDQSEGKPIHKIITSKAEPWIQKKTSSRPWRANNQEGSEARNVCVAWPWLLGDQENESINQKNISSGLKPESQAGESNQPVNNEASGSWSSFYNVNSTSSTSSCGSGSSCAANNKVDVDFDCLDYEILWEDLTIGEPIGQGSCGTVYHALWYGSDVAVKVFSKLEYSDDVILSFRQEVSLMKRLRHPNIILFMGAVTSPQRLCIVTEFLPRGSLFHLLQRNTSKLEWRRRVHMALDIARGVNYLHHCNPPIIHRDLKSSNILVDKNWTVKVGDFGLSCLKHETYLTTKTGKGTPQWMAPEVLRNELSDEKSDVYSFGVILWELATEKIPWETLNPMQVIGAVGFMNHRLEIPEDVDPQWASIIETCWHSDPACRPTSQELVERLRELQRQYAIQFQAARSAVEEGTQKEF 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1219 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 561 573 IPR008271 GO:0004672|GO:0006468
Ssu1g1219 720 Pfam Protein tyrosine and serine/threonine kinase 442 694 IPR001245 GO:0004672|GO:0006468
Ssu1g1219 720 ProSiteProfiles PAS repeat profile. 63 134 IPR000014 -
Ssu1g1219 720 MobiDBLite consensus disorder prediction 42 61 - -
Ssu1g1219 720 SMART pas_2 65 132 IPR000014 -
Ssu1g1219 720 MobiDBLite consensus disorder prediction 329 347 - -
Ssu1g1219 720 Gene3D Phosphorylase Kinase; domain 1 435 519 - -
Ssu1g1219 720 CDD PAS 78 176 IPR000014 -
Ssu1g1219 720 Gene3D PAS domain 76 177 - -
Ssu1g1219 720 MobiDBLite consensus disorder prediction 251 268 - -
Ssu1g1219 720 ProSiteProfiles Protein kinase domain profile. 442 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1219 720 CDD STKc_MAP3K-like 448 694 - -
Ssu1g1219 720 Coils Coil 7 34 - -
Ssu1g1219 720 SUPERFAMILY Protein kinase-like (PK-like) 427 694 IPR011009 -
Ssu1g1219 720 MobiDBLite consensus disorder prediction 269 284 - -
Ssu1g1219 720 MobiDBLite consensus disorder prediction 234 249 - -
Ssu1g1219 720 TIGRFAM sensory_box: PAS domain S-box protein 63 175 IPR000014 -
Ssu1g1219 720 MobiDBLite consensus disorder prediction 234 347 - -
Ssu1g1219 720 Pfam PAS fold 67 172 IPR013767 GO:0006355
Ssu1g1219 720 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 48 718 - -
Ssu1g1219 720 Gene3D Transferase(Phosphotransferase) domain 1 520 719 - -
Ssu1g1219 720 SMART serkin_6 442 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1219 720 PRINTS Tyrosine kinase catalytic domain signature 621 643 IPR001245 GO:0004672|GO:0006468
Ssu1g1219 720 PRINTS Tyrosine kinase catalytic domain signature 602 612 IPR001245 GO:0004672|GO:0006468
Ssu1g1219 720 PRINTS Tyrosine kinase catalytic domain signature 665 687 IPR001245 GO:0004672|GO:0006468
Ssu1g1219 720 PRINTS Tyrosine kinase catalytic domain signature 516 529 IPR001245 GO:0004672|GO:0006468
Ssu1g1219 720 PRINTS Tyrosine kinase catalytic domain signature 555 573 IPR001245 GO:0004672|GO:0006468
Ssu1g1219 720 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 48 718 - -
Ssu1g1219 720 MobiDBLite consensus disorder prediction 302 322 - -
Ssu1g1219 720 SUPERFAMILY PYP-like sensor domain (PAS domain) 59 175 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1219 Ssu-Chr1 27019193 27025737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1219 8 716 MAP Kinase Kinase Kinase AT3G06620 57.647 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Ssu1g1219 PK_Tyr_Ser-Thr 2.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1219 - - gmx:100815858 1187.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1219 1 27019193 27025737 Ssu1g1219 1 27019193 27025737 ECH
Ssu6g0414 6 6439587 6446364 Ssu1g1219 1 27019193 27025737 PCT