Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1216 ATGGCTTCTCCTTCGTGGTCGCCTTTGCATGCTTCGTCATTCATAGTGTCAATTCTCATTCTAATTTGCATGTCACATTGTGCTCTTGGCTTTGATGGACAAACAGTCGTAGACTCTCCTAAGTTAACAGAAAAATTAGGAATCAATCGCACTATCAAAGTAGATATCAACGGCAATGGGGAGTTCAAATCTATCCAAGCTGCCATAGATTCCATTCCTGAAGAAAATTCTAACTGGGTGATCCTCCATGTTAGGAAAGGAATATACAGAGAAAAGGTGCACATACCAGAGAATAAGCCTTATATATTCATGAGAGGGAATGGGAGAGGAAAAACAGCCATAGTTTGGTCTCAGAGCTCTGAGGACAACGTAGCATCTGCTACCTTCAAAGCCGAAGCACACGACTTCATTGCCTTTGGAATTAGCTTCAAGAATGAGGCACCTACGGGGGTTGCCTATACCTCGCAAAATCAATCTGTGGCAGCATTTGTGGCAGCAGACAAAGTGGCATTTTATCATTGCGCATTTTACAGTACTCATAACACTCTCTTCGATCATAAAGGCAGACATTACTACGACGGTTGCTACATTCAAGGCTCAATTGACTTTATATTTGGTCGTGGCAGATCGATCTTCCATAATTGTGAGATGTTTGTGATTGATGACAAAAGGTTAAAGATTCATGGTTCAGTCACGGCTCAAAATAGGGAAAGTGAAGGTGAGATGACTGGGTTTGTCTTCATCAAAGGCAAGGTTTATGGCATTGGTGGGGTGTACCTAGGAAGGGCCAAGGGTGCTTATTCTAGGGTGATCTTTGCCGAGACGTATCTCTCCATGACCATTGTCCAAGAAGGGTGGACAAATTGGAGCTATGATGGTAGCACACAAAATCTATTCCATGCGGAGTACAAATGTCATGGACCTGGAGCCTTTACGGGGGGACGCGCTTCTTGGTCGAAACAGCTAACTAAAGAAGAAGTTGCTCCTTTTATATCTATTGATTACATTGATGGCAAGAATTGGTTGCCAGTATGGGTATAA 1041 0.4294 MASPSWSPLHASSFIVSILILICMSHCALGFDGQTVVDSPKLTEKLGINRTIKVDINGNGEFKSIQAAIDSIPEENSNWVILHVRKGIYREKVHIPENKPYIFMRGNGRGKTAIVWSQSSEDNVASATFKAEAHDFIAFGISFKNEAPTGVAYTSQNQSVAAFVAADKVAFYHCAFYSTHNTLFDHKGRHYYDGCYIQGSIDFIFGRGRSIFHNCEMFVIDDKRLKIHGSVTAQNRESEGEMTGFVFIKGKVYGIGGVYLGRAKGAYSRVIFAETYLSMTIVQEGWTNWSYDGSTQNLFHAEYKCHGPGAFTGGRASWSKQLTKEEVAPFISIDYIDGKNWLPVWV 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1216 346 Gene3D - 46 345 IPR012334 -
Ssu1g1216 346 ProSitePatterns Pectinesterase signature 2. 197 206 IPR033131 -
Ssu1g1216 346 PANTHER PECTINESTERASE 67-RELATED 13 345 - -
Ssu1g1216 346 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 13 345 - -
Ssu1g1216 346 Pfam Pectinesterase 53 338 IPR000070 GO:0030599|GO:0042545
Ssu1g1216 346 SUPERFAMILY Pectin lyase-like 48 344 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1216 Ssu-Chr1 26997417 26999449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1216 14 342 Carbohydrate Esterase AT5G47500 36.364 1.14e-74 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1216 - - gmx:100792967 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1216 1 26997417 26999449 Ssu1g1216 1 26997417 26999449 ECH