Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1214 ATGCTCCATGCGTTGATGAGTCTTATCGCGCGCTGTTGGAAGCCGTTCGGGCACGGTGACGACGCCAATGCCGGGAGGGAATGCAAAGACGGCCTGCTCTGGTACCGCGACATCGGAAGGTTCGCCGCCGGCGATTTCTCCATGGCCGTCGTCCAGGCCAACCAGGTCCTCGAGGACCAGAGCCAGATCGAGTCCGGAACCTTCGGCACCTTCGTCGGCGTCTACGACGGCCACGGCGGCCCCGATTGCTCGCGATACGTCTGCGACAACTTGTTCCGCAATCTCCAAGCGATATTGGCTGAGTCGCGGAGTGTTGCGACGACTGAGGCCATTCAGCAGGCGTTCCAGCGGACCGAGGAGGGGTTCACGGCGCTTGTTTCGGAGCTGTGGAGCTCTCAGCCGCAGGTTGCGACCACTGGGACGTGTTGTTTGGTTGGAGTTATTTGTCGGCAGACGATGTTTGTGGCGAGTCTTGGAGATTCCCGTGCTGTGTTGGGTAGGAGAGTTGGCAACACCGGTGGGATGGCTGCGATTCAGTTGTCTACGGAGCACAACGCGAATGTTGAGGCTGTTAGGCAGGAGCTTATGGAATTGCACCCCGATGACCCCCAAATTGTTGTCCTCAAACATGGAGTGTGGAGAGTAAAAGGCATTATTCAGGTTTCTAGATCTATAGGTGACGTATATATGAAACATGCGCAGTTTAACCGGGAACCCATTAATGCAAAATTCCGACTTCCCGAACCAATGAACATGCCTTACTTGTCTGCTAATCCAACTATTATTTCTCATCCTCTCCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACCTGAGTAATGATCAAGCAGTGGATATTGTTCACAGCAGTCCACGTGCGGGTAGCGCCAAGAGACTTGTCAAGGCTGCCCTACATGAAGCAGCAAGAAAACGTGAAATGCGATATTCAGACCTTTATAAGATTGACAAGAAGGTTCGTCGCCATTTTCACGACGATATAACTGTTATTGTTTTATTCTTAAACCACGACCTTATATCCAGAGGCGCAGTTCTAAATCCGCCACTCACAATTCGAAGTGCTCTCGATCACTGA 1110 0.518 MLHALMSLIARCWKPFGHGDDANAGRECKDGLLWYRDIGRFAAGDFSMAVVQANQVLEDQSQIESGTFGTFVGVYDGHGGPDCSRYVCDNLFRNLQAILAESRSVATTEAIQQAFQRTEEGFTALVSELWSSQPQVATTGTCCLVGVICRQTMFVASLGDSRAVLGRRVGNTGGMAAIQLSTEHNANVEAVRQELMELHPDDPQIVVLKHGVWRVKGIIQVSRSIGDVYMKHAQFNREPINAKFRLPEPMNMPYLSANPTIISHPLQPNDSFLIFASDGLWEHLSNDQAVDIVHSSPRAGSAKRLVKAALHEAARKREMRYSDLYKIDKKVRRHFHDDITVIVLFLNHDLISRGAVLNPPLTIRSALDH 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1214 369 CDD PP2Cc 46 346 IPR001932 -
Ssu1g1214 369 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 369 - -
Ssu1g1214 369 PANTHER ALPHABET, ISOFORM E-RELATED 3 369 - -
Ssu1g1214 369 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Ssu1g1214 369 SUPERFAMILY PP2C-like 54 347 IPR036457 -
Ssu1g1214 369 Gene3D - 39 354 IPR036457 -
Ssu1g1214 369 SMART PP2C_4 39 344 IPR001932 -
Ssu1g1214 369 Pfam Protein phosphatase 2C 70 316 IPR001932 -
Ssu1g1214 369 ProSiteProfiles PPM-type phosphatase domain profile. 45 346 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1214 Ssu-Chr1 26936681 26941564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1214 1 366 PP2C-type Phosphatase Gene Family AT3G51370 55.615 1.35e-156 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1214 K01102 - gmx:100814799 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1214 1 26936681 26941564 Ssu1g1214 1 26936681 26941564 ECH
Ssu6g0424 6 6614094 6616614 Ssu1g1214 1 26936681 26941564 PCT