Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1211 ATGCCGTCGTCATCTCTGATCGCGAACCCGACCGCGATCACGGATCGGTCACGTGACTCGCACCGGgcgaagaagaagaggaaatcCCCCGCGAAGCACGCCCCGCAGCAGGAGCAGAGCCACGCGAAGTGGAAAACCCACGCGCAGCAGCAGCTGGTCAACATCTCCGGCGACGCCCCGCGGCGGGGCAGGGCGGTCCGGGAGGCCGCCGACAGGGTGCTCGCCGTCGCCGCCAGGGGGAGGACGCGGTGGAGCCGCGCCATCCTCACGAGCCGGCTCAAGCTGAAGTTCAGGAAGCAGCAGCACAAGAGGCAGAAAGTGGTTGGGCCGGCCCGGCCCAGGAAGCCCCGGTTCAGCGTGCTCCGGCTCAAGGGGAAAACCCTCCCCGCGGTCCAGCGAAAAGTTAGGGTCCTGGGCCGGTTGGTACCCGGTTGCAGAAAAGAACCGCTTCCGGTGATTCTCGAAGAGGCAATCGATTACATACCCGCGCTTGAGATGCAGGTTCGAGCCATGGCGGCTCTCGCTGACTTACTCTTGGGCTCTtcctccgccgccgccgccgcatCCAGCTCCGCCGCCGCGCCGCCGAGTTAA 594 0.6195 MPSSSLIANPTAITDRSRDSHRAKKKRKSPAKHAPQQEQSHAKWKTHAQQQLVNISGDAPRRGRAVREAADRVLAVAARGRTRWSRAILTSRLKLKFRKQQHKRQKVVGPARPRKPRFSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPLPVILEEAIDYIPALEMQVRAMAALADLLLGSSSAAAAASSSAAAPPS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1211 197 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 10 192 IPR044660 GO:0006355
Ssu1g1211 197 MobiDBLite consensus disorder prediction 41 56 - -
Ssu1g1211 197 CDD bHLH_AtIBH1_like 120 169 IPR044549 GO:0006355
Ssu1g1211 197 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 10 192 - -
Ssu1g1211 197 MobiDBLite consensus disorder prediction 1 63 - -
Ssu1g1211 197 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 180 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1211 Ssu-Chr1 26888189 26888814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1211 61 174 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 63.415 1.13e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1211 - - gmx:100792237 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1211 1 26888189 26888814 Ssu1g1211 1 26888189 26888814 ECH
Ssu6g0431 6 6703245 6703874 Ssu1g1211 1 26888189 26888814 PCT