Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1209 ATGGCGGAGGAGAAAGGAGAGGAGGAAGCGCACCCCAACAACTCATCATCCACCACCATGGCATTTTCCGACGAGATTCCGAACAACCTGGGTTTCCCTTTCCAGCCAACCACCATCTTTGACATGATGCCACCGTCTTCCTCGTGCGACCGCAAGGCCTCCTCCTTCGGCTTCGTGGACTTGCTCGGCGTCCACGACTACAACGCGCCGCCCTTCGATTGGCTCCCCGTCGCCGCCGCCCACCGCCCCGCGCCGTCGCCGGCGAGCTCTAACGTCCGGGGCTCCTCCGAGGTGTTGAACACGTCGGCGTCGCCCAATTTGTCGTCGGTTTCGTCGTCGTCGAATGAGGCCACAGTCAACAACACCACCGTGGAACAACAGAGTGGGAAACCTGGGAATGAACAAGAAGAGGCAGTAGCACAGGAAGAAGGTGGTAATGGAGGCAGAGGAGAAGACCAAAATCAAGACAAGACTAAGAAACAGCTGAAACCGAAGAAGAAGAACCAAAAGAAGCAACGAGAACCGAAATTTGCGTTCTTGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTACAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCAGTGCTGGTTGCGGCGTTAAGAAGCGCGTGGAGCGTTCCTCCGAAGACCCTTCCATCGTGGTTACCACCTACGAGGGGCAGCACACGCACCCTTGCCCTGCTTCGTCACGGGCCAGCTTCGGGTTCGTGCACGAGCCTGGTGGGTTCGGACACGCAAGTTTGGGTGCTGGCGGTTCTTTCGGTTCCCCGCACTTCCTGCTGCCACATCAGCACCAGCAACCACAGGCTTCGGCTTTGACATATAACTCCACCCCTCCTTTGAGTGTTGTTGGCTCCAGTAGTAACTACATGATGAACACGACGTCGTTTGGTGGCTTTGCTCAGGATCACGCGAACCGTTTCGGACACGAGGCTTTGTTGAGGGACAATGGGCTGCTTCAGGACATTATTGTGCCAACGCAGGTGAGGAAGGAGGAGAAGGATTGA 1071 0.5612 MAEEKGEEEAHPNNSSSTTMAFSDEIPNNLGFPFQPTTIFDMMPPSSSCDRKASSFGFVDLLGVHDYNAPPFDWLPVAAAHRPAPSPASSNVRGSSEVLNTSASPNLSSVSSSSNEATVNNTTVEQQSGKPGNEQEEAVAQEEGGNGGRGEDQNQDKTKKQLKPKKKNQKKQREPKFAFLTKSEVDHLDDGYKWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSEDPSIVVTTYEGQHTHPCPASSRASFGFVHEPGGFGHASLGAGGSFGSPHFLLPHQHQQPQASALTYNSTPPLSVVGSSSNYMMNTTSFGGFAQDHANRFGHEALLRDNGLLQDIIVPTQVRKEEKD 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1209 356 MobiDBLite consensus disorder prediction 1 35 - -
Ssu1g1209 356 Gene3D WRKY domain 172 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g1209 356 Pfam WRKY DNA -binding domain 189 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g1209 356 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 79 347 IPR044810 GO:0003700
Ssu1g1209 356 MobiDBLite consensus disorder prediction 12 35 - -
Ssu1g1209 356 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 79 347 - -
Ssu1g1209 356 SUPERFAMILY WRKY DNA-binding domain 181 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g1209 356 SMART WRKY_cls 188 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g1209 356 MobiDBLite consensus disorder prediction 81 178 - -
Ssu1g1209 356 MobiDBLite consensus disorder prediction 88 134 - -
Ssu1g1209 356 ProSiteProfiles WRKY domain profile. 183 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1209 Ssu-Chr1 26771397 26773340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1209 158 354 WRKY Transcription Factor Family AT2G47260 52.153 7.69e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu1g1209 WRKY 3.5e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1209 - - gmx:100812252 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1209 1 26771397 26773340 Ssu6g0433 6 6746582 6748292 PCT