Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1191 ATGTCCCATTTCGTTTTCAACAAGGGTGATCCCGTGGAGGTGACTAAGAACAATTACTACTACCCCGCCTCCGTCGTCCGCCCCCCTTCCAAGAACAAGAACCTCGTCTTCCTCGAATACCTCACCCTCTCCGCCCCCTCCCACCCCAAACGCCTCCGGGAATACGTCAACGTCGCTAGCGTCAGGCCCAAGCTACCGCTCCAGCTCAACCCTTGGTTCAGGGTCGGCGACGCCGTCGACGCCTTCCGTCAGACCCACAGCGCCTGGTGCCCCGCCACCGTCGCCGACATCCTCGAAAACTCCAGCTACCTCGTCGCCTTTCTCGCCCCCGAAAACGGCAATGACTCCGCCGTCATCCACCACTCCGCCCTCCGCCTTCACCGTAATTGGGTGCACGGGAACTGGCTCCCCCCTCTCCCCGGACAGGAGCAGCCCCCTGAGATGGAGACAAAGCCTGAAAATTTAAGGTTTAGGATCAAATACAGCAGGAGACCACTAAAGGAATCAAAGTTTAAAAAAGGGAGGATAGTGGAAGTCAGCAGGGATGATGAAAGTTATAAGGGTGCTTGGTTTGTTGCCACTATTGTTGACATAATAGGAAAAGACAGGTTTCAAGTAGAATATAGGGACATGAAGACCAATGATGGCACCCAGCTCTTGAAAGAAGAAATTGATGCAAGGTTTATTAGGCCCTGCCCTCCTGAAGTTCCATTTGCTGGTTCTTTCAAACAGTTCCAAGAAGTTGATGCATGGTATAATGATGGGTGGTGGGAAGCTGTGGTTCTTGAAGTACTAAATAACAGAGAATGTTTGGTTTCTTTCATTCACAATGatgtattgaaatttgaaaattctaaacTAAGGCCTCATCAAGACTGGTTTGATGGAAAATGGGTGATGTCTTCCAAGAAATCAGGTGAGCTGGTAAAGAAGTTTGGAGATCTGATGCCTAAAACCAAGAATGTCACTGAAATTAAATTAGTCTTGAAACGTCAAAAGCCTACTGAGAGTTCAAAGAAGCCTAGAGATGTAATAGCAAGGACCACCAACACCCGAAGCAAATTTGTGGTGCATTTCTGTAAAGGTGCAAAGGTAGAAGTCAGAAGTGATGAAGAAGGCTACCAAGATGCCTGGTATACTGCCATTGTTGTTGACTCTATGCAGAATGACAAGTACTTGGTGGAGTATTTGACCCTACAAACAGATGACTTAACTGAACAACTGAAAGAAGTAGCACATGCTTCAGATATCAGGCCATATCCACCAGATGTCAATCACGTTCACAACTTTGCACTGCGTGAAATGGTTGATGCTTGGTATAATGAAGGATGGTGGGTAGGACAGGTATCTAGTGTTCTTATTGGCTTCAAGTATAAGGTTTACTTTTGGCCTACAAAGGAGAAGCTGGAATTTGAGCATTGTCATTTGAGGCCTCATCAGGATTGGATTGATGGAAAATGGGTGCTTGCTTCTTTGGGCCGAGGACCTGATCATTAG 1497 0.4669 MSHFVFNKGDPVEVTKNNYYYPASVVRPPSKNKNLVFLEYLTLSAPSHPKRLREYVNVASVRPKLPLQLNPWFRVGDAVDAFRQTHSAWCPATVADILENSSYLVAFLAPENGNDSAVIHHSALRLHRNWVHGNWLPPLPGQEQPPEMETKPENLRFRIKYSRRPLKESKFKKGRIVEVSRDDESYKGAWFVATIVDIIGKDRFQVEYRDMKTNDGTQLLKEEIDARFIRPCPPEVPFAGSFKQFQEVDAWYNDGWWEAVVLEVLNNRECLVSFIHNDVLKFENSKLRPHQDWFDGKWVMSSKKSGELVKKFGDLMPKTKNVTEIKLVLKRQKPTESSKKPRDVIARTTNTRSKFVVHFCKGAKVEVRSDEEGYQDAWYTAIVVDSMQNDKYLVEYLTLQTDDLTEQLKEVAHASDIRPYPPDVNHVHNFALREMVDAWYNEGWWVGQVSSVLIGFKYKVYFWPTKEKLEFEHCHLRPHQDWIDGKWVLASLGRGPDH 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1191 498 Gene3D - 347 430 - -
Ssu1g1191 498 Gene3D - 159 242 - -
Ssu1g1191 498 Pfam Agenet domain 362 422 IPR008395 -
Ssu1g1191 498 Pfam Agenet domain 175 234 IPR008395 -
Ssu1g1191 498 Pfam Agenet domain 9 66 IPR008395 -
Ssu1g1191 498 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 6 108 - -
Ssu1g1191 498 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 92 492 - -
Ssu1g1191 498 SMART agenet_At_2 240 295 IPR014002 -
Ssu1g1191 498 SMART agenet_At_2 169 237 IPR014002 -
Ssu1g1191 498 SMART agenet_At_2 428 484 IPR014002 -
Ssu1g1191 498 SMART agenet_At_2 71 132 IPR014002 -
Ssu1g1191 498 SMART agenet_At_2 357 425 IPR014002 -
Ssu1g1191 498 SMART agenet_At_2 4 69 IPR014002 -
Ssu1g1191 498 PANTHER AGENET DOMAIN-CONTAINING PROTEIN 6 108 - -
Ssu1g1191 498 PANTHER AGENET DOMAIN-CONTAINING PROTEIN 92 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1191 Ssu-Chr1 26377873 26391261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1191 368 482 PHD Transcription Factor Family AT5G58610 27.407 6.13e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1191 - - adu:107483399 588.186