Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1185 ATGGAAGTGAAAGGAAGGGTAAGCAACTCCACCGCCACCATCCAAAGCGAGGACGAGATGGACCTTCGAAGAGGCCCATGGACCGTCGATGAGGACCTTGCTCTCATCAATTACATTGCCAATCACGGGGAAGGTCGATGGAACTCCCTTGCCCGTTCTGCTGGACTCAAACGAACTGGCAAGAGCTGCAGATTGAGGTGGTTGAATTATCTGCGTCCCGATGTTCGACGTGGCAACATCACACTCGAAGAACAGCTTCTTATTCTCGAGCTCCACGGTCGCTGGGGAAACCGATGGTCCAAAATTGCTCAATACTTGCCCGGAAGAACCGAtaatgagataaaaaattattggaggACTCGTGTCCAAAAGCATGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGATGCCATGCGCTACCTTTGGATGCCAAGGCTGGTGGAGCGCATTCAAGCCGCCGCGGCCACCGCTGCCATGGCTCCCACCGCTGGTTCTCCAACGGTATCTGCCAGTGCTACTACCACCATCGCCAACAATAATACCACATACAACTACGACAGCAACAACCTTAACAACAATTTTGAGGTTCATAGTGGGAACATGATGTTAAGTCCAGCAATTATGAACAACAACTTTGGCGGTTCACAGGTTGCACACAGTTACACTCCAGAGAATAGTAGCACGGGTGCATCATCAGACTCGTTTGGGACTCAGGTTTCACCCGTCTCGGACTTGACTCAGGATTATTACAATAATGTCACGGTtggtaataacaacaataacccTAATCTTGCTTACTACCAACAAACTCATGATCAACTCAGCTTTTTAGATTGCATCACTAGCCCATCCGGGTTGTTCCCTCAGGAGATGGATTTCCAATCCATGGAACCAAACACCCCGTGGATTCAGAGTAATGGGGACACATCCAACGGTTTCTGGAATGTTGAAAACATGTTGCTCTTTCAACAACTCACTGACAACATGTGA 1002 0.4671 MEVKGRVSNSTATIQSEDEMDLRRGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHGRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAATAAMAPTAGSPTVSASATTTIANNNTTYNYDSNNLNNNFEVHSGNMMLSPAIMNNNFGGSQVAHSYTPENSSTGASSDSFGTQVSPVSDLTQDYYNNVTVGNNNNNPNLAYYQQTHDQLSFLDCITSPSGLFPQEMDFQSMEPNTPWIQSNGDTSNGFWNVENMLLFQQLTDNM 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1185 333 Gene3D - 21 77 - -
Ssu1g1185 333 CDD SANT 92 120 IPR001005 -
Ssu1g1185 333 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Ssu1g1185 333 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Ssu1g1185 333 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Ssu1g1185 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Ssu1g1185 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 75 IPR017930 -
Ssu1g1185 333 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 330 IPR044676 GO:0003700|GO:0006355|GO:0043565
Ssu1g1185 333 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Ssu1g1185 333 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Ssu1g1185 333 MobiDBLite consensus disorder prediction 222 242 - -
Ssu1g1185 333 CDD SANT 26 71 IPR001005 -
Ssu1g1185 333 SMART sant 23 73 IPR001005 -
Ssu1g1185 333 SMART sant 76 124 IPR001005 -
Ssu1g1185 333 PANTHER MYB TRANSCRIPTION FACTOR 1 330 - -
Ssu1g1185 333 Gene3D - 81 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1185 Ssu-Chr1 26117359 26119052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1185 17 328 MYB Transcription Factor Family AT5G49620 52.226 7.78e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu1g1185 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1185 K09422 - gmx:100305347 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1185 1 26117359 26119052 Ssu1g1185 1 26117359 26119052 ECH