Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1181 ATGATCGTGAGCCAGAACATGGTGGCGGAAGCGGAAATCATTTGTCAGCAGAGTATTCCGATGTTGGACGTGAAGTACCACCTTCGCGTGGGGCAAGAACAAGGCGTTAAGGTCGAGGTTTCGCCCACCTCCAACGCTGTTCCCATCTTTGGCCACGTGCGGGGTTCCGCTGAATCGGTTGAAACGACTCGTTTCGAATCGGTTGTGAGTTGTTCTGAGATGATTGAAGATTCCATTTTAGAGGCTCCTGTTACCAAATACACGCTGAATGTTCGATCCGGATGCTGTGCTGATATTGGACCCAGGGGGTCTATGGATGATGAGCACATTCAGATAGATGATCTAGCGGCCCACCTTGGATTGGTGTTCAAGCAGCCTATACTGAGCGCGTTTTATGCAGTTTTTGATGGGCATGGAGGGCCTGATGCAGCTGCCTTTGTTAAGAACAATGCTATGAGATTGTTTTTTGAAGATGCTGATATGCTGCAATCGTATGATGCTGATGCACTTTTTCTCAAGAGGTTGGAAGATTCTCATCGGAGAGCTTTTTTGGGCGCGGACCTTGCCTTGGCTGATGAACAAAGTGTTAGTAGTTCCTGTGGAACAACGGCGTTGACTGCCCTTGTTCTTGGAAGGCATTTGTTGGTTGCTAATGCTGGTGACTGTCGCGCTGTTCTTTGTAGGCGAGGAGTAGCTGTTGATATGTCCCAAGATCACAGACCGAGTTATTTACCAGAACGCAGGAGAGTGGAGGAGTTAGGTGGTTTCATTAATGATGGGTATCTCAATGGTGATCTTTCTGTGACTCGTGCCCTTGGGGATTGGGACTTGAAATTTCCAGTTGGTTCTGCGTCGCCCCTTATTGCCGAGCCAGATGTTCAGGTTGTCACATTGACAGAGGATGATGAGTTCTTGATCATTGGGTGTGATGGAATTTGGGATGTAATGTCAAGCCAGGATGCAGTTAGTCTTGTGCGGCGCGGATTAAGAAGGCATGATAACCCACAACAATGTGCCAGAGAGCTAGTTAAGGAAGCATTGCGCCTACACACATCAGATAATCTTACTGTGATTGTTATCTGCTTGTCCCCTGTCCAAAGCATTGTTGAATCATGTCCACCCCAAAGGCGAAGATTCAGAGCTTGCTCTCTGTCTGAAGAGGCCCGGAACAGATTGAGGAGCTTGCTAGAGGGAAACTGA 1200 0.4808 MIVSQNMVAEAEIICQQSIPMLDVKYHLRVGQEQGVKVEVSPTSNAVPIFGHVRGSAESVETTRFESVVSCSEMIEDSILEAPVTKYTLNVRSGCCADIGPRGSMDDEHIQIDDLAAHLGLVFKQPILSAFYAVFDGHGGPDAAAFVKNNAMRLFFEDADMLQSYDADALFLKRLEDSHRRAFLGADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGVAVDMSQDHRPSYLPERRRVEELGGFINDGYLNGDLSVTRALGDWDLKFPVGSASPLIAEPDVQVVTLTEDDEFLIIGCDGIWDVMSSQDAVSLVRRGLRRHDNPQQCARELVKEALRLHTSDNLTVIVICLSPVQSIVESCPPQRRRFRACSLSEEARNRLRSLLEGN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1181 399 ProSitePatterns PPM-type phosphatase domain signature. 131 139 IPR000222 GO:0043169
Ssu1g1181 399 Pfam Protein phosphatase 2C 102 354 IPR001932 -
Ssu1g1181 399 PANTHER PROTEIN PHOSPHATASE 2C 7 386 IPR015655 GO:0004722|GO:0006470
Ssu1g1181 399 SUPERFAMILY PP2C-like 86 364 IPR036457 -
Ssu1g1181 399 SMART PP2C_SIG_2 107 362 IPR001932 -
Ssu1g1181 399 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 7 386 - -
Ssu1g1181 399 Gene3D - 78 366 IPR036457 -
Ssu1g1181 399 CDD PP2Cc 91 362 IPR001932 -
Ssu1g1181 399 SMART PP2C_4 82 360 IPR001932 -
Ssu1g1181 399 ProSiteProfiles PPM-type phosphatase domain profile. 92 362 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1181 Ssu-Chr1 25912984 25914829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1181 1 398 PP2C-type Phosphatase Gene Family AT1G48040 57.750 7.01e-148 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1181 K14803 - gmx:100798957 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1181 1 25912984 25914829 Ssu1g1181 1 25912984 25914829 ECH
Ssu6g0460 6 7180576 7182317 Ssu1g1181 1 25912984 25914829 PCT