Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1179 ATGGAAGAGACATTTGTCCCGTTTCGTGGAATTAAAAATGATCTTCAAGGGAGATTGATGTGTTACAAGCAAGACTGGATTGGTGGTCTCACGGCAGGCTTCAGGATACTAGCCCCTACCACATATATCTTTTTTGCATCAGCAATTCCTGTTATTTCATTTGGAGAACAATTGGAAAGAGACACAGATGGAGTACTCACCGCAGTGCAAACATTAGCATCTACTGCATTATGTGGAATTATACACTCTATTATAGGAGGCCAGCCTTTGCTGATTCTTGGAGTAGCAGAACCAACTGTAATTATGTATACATTCATGTTCAACTTCGCGAAAAGTAGACCAGAGTTGGGTTCAAAACTCTTTCTAGCGTGGACTGGATGGGTATGCATGTGGACTGCCATCTTATTGTTCCTACTGGCTATCTTAGGAGCTTGCTCCATCATCAACAGGTTCACTCGCCTAGCGGGGGAACTGTTTGGCCTTCTTATTGCAATGCTTTTTATGCAAGAGGCTATTAAAGGACTCATCAATGAGTTTCACATACCTGAGAGGGCAAACCTAACATCACCCGAGTTTCAATCTTCATGGAGATTTGGAAATGGCATGTTTGCTTTGATTATGTCCTTTGGCCTCCTGCTTACAGCATTGAGAAGCCGAAAAGCTAGGTCTTGGCGATATGGATCAGGACGTTTACGAGGCTTCATAGCAGATTATGGTGTCCCATTGATGGTTCTATTGTGGACTGCCATTTCTTATATTCCAGCTGGAAGTATTCCAAAAGGAATCCCTAGGCGTCTCTTCAGTCCAAATCCATGGTCCGCTGGTGCATTTGAAAACTGGACTGTCATAAAGGACATGATGAATGTGCCAGTTCTCTACATTATTGGAGCGTTTATTCCAGCAACAATGATTGctgttctttattattttgaccATAGTGTGGCATCTCAGCTTGCTCAGCAGAAAGAGTTCAATTTAAGAAAGCCCCCTTCTTTCCATTATGATTTGCTTCTTTTGGGATTCATGGTTATATTATGTGGTCTAATTGGAATTCCCCCGTCAAATGGTGTTATTCCACAATCACCAATGCATACCAAAAGTTTAGCTACATTGAAGCACCAGTTGCTTAGAAACCGGCTTGTTGCAACGGCACGAAGTTCTATGAGAAAGCAAGAAAGCTTGGGACAAGTATATGGAAGTATGCAAGATGCTTACTGGCAGATGCAAACCCCTCTAGTTCACCAGGAACCTTCCTCGCAGGGACTTAAAGAGTTGAAAGAGTCAACTATTCAATTGGCATCAAGCATTGGGAGTATAAATGCTCCAGTTGATGAGTCAATATTTGATGTCGAGAAGGAAATTGATGACTTATTGCCTGTCGAGGTTAAAGAACAACGAGTGAGCAACCTACTCCAATCTTTGATGGTAGGAGGATGTGTAGCAGCAATGCCTTTCCTGAAAATGATTCCAACTTCTGTACTCTGGGGCTATTTTGCTTTCATGGCCATTGAAAACTTACCTGGCAACCAGTTTTGGGAAcggattttattaattttcactgCTCCAAGCAGAAGATACAAagtCTTGGAGGAGTGCCATGCAACTTATGTGGAAACCGTACCATTCAAGACAATTGCAGTATTTACGCTCTTCCAAACTGCTTACTTGCTTGTTTGTTTTGGTATCACTTGGGTTCCAACAGCTGGGGTTCTATTCCCATTGATGATCATGCTTCTGGTTCCTGTAAGGCAGTACATTCTGCCCAAGTGTTTCAAAGGAGCACACCTTCAAGATTTAGATGCTGCAGAATATGAAGAAGTACCTGCTTTACCTTTCAACCTAGCGACTGAAGGGAACTTGAGCAGGACAACTTCCTTTGCAGATGATGGAGAGATTATAGATGGAATAATTACTAGAAGCCGGGGTGAGGTTAGACGTGTTTGCAGTCCAAAGGTGATGAGCTCCACTGAAACAATATCCCAAGAGTTAACAAGTCTTCAAAGTCCAAAGTTCGCAGATAAAGTAGACAGCCCTCGGATAAGCCAACTCAGAGGAAACCAAAGCCCTCGAGGTGTTGGGAGAGGACCATTTAGCCCTGCAGAAGTTAGGCCATCCAATTTGAGGAAAGGTGGTTGA 2136 0.4218 MEETFVPFRGIKNDLQGRLMCYKQDWIGGLTAGFRILAPTTYIFFASAIPVISFGEQLERDTDGVLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVIMYTFMFNFAKSRPELGSKLFLAWTGWVCMWTAILLFLLAILGACSIINRFTRLAGELFGLLIAMLFMQEAIKGLINEFHIPERANLTSPEFQSSWRFGNGMFALIMSFGLLLTALRSRKARSWRYGSGRLRGFIADYGVPLMVLLWTAISYIPAGSIPKGIPRRLFSPNPWSAGAFENWTVIKDMMNVPVLYIIGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPPSFHYDLLLLGFMVILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNRLVATARSSMRKQESLGQVYGSMQDAYWQMQTPLVHQEPSSQGLKELKESTIQLASSIGSINAPVDESIFDVEKEIDDLLPVEVKEQRVSNLLQSLMVGGCVAAMPFLKMIPTSVLWGYFAFMAIENLPGNQFWERILLIFTAPSRRYKVLEECHATYVETVPFKTIAVFTLFQTAYLLVCFGITWVPTAGVLFPLMIMLLVPVRQYILPKCFKGAHLQDLDAAEYEEVPALPFNLATEGNLSRTTSFADDGEIIDGIITRSRGEVRRVCSPKVMSSTETISQELTSLQSPKFADKVDSPRISQLRGNQSPRGVGRGPFSPAEVRPSNLRKGG 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1179 711 PANTHER BORON TRANSPORTER 3-RELATED 1 702 - -
Ssu1g1179 711 MobiDBLite consensus disorder prediction 670 711 - -
Ssu1g1179 711 PANTHER ANION EXCHANGE PROTEIN 1 702 IPR003020 GO:0005452|GO:0006820|GO:0016020
Ssu1g1179 711 Pfam HCO3- transporter family 202 373 IPR011531 GO:0006820|GO:0016021
Ssu1g1179 711 Pfam HCO3- transporter family 7 180 IPR011531 GO:0006820|GO:0016021
Ssu1g1179 711 Pfam HCO3- transporter family 460 550 IPR011531 GO:0006820|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1179 Ssu-Chr1 25879103 25884001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1179 1 695 Antiporters AT3G62270 77.011 0.0 1110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1179 K24194 - gmx:100795777 1324.69