Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1176 atgaagaaaattgACTTTGGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACAGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATTCCTCCATGTAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCTAGCGATCTTCTTGTTAATCCTGTCCAGGTTAACATTGGAAGTGTAGATGAGCTTGCTGCAAATAAAGCCATCACACAGTTTGTTGAAGTCGTCCCACAAATGGAGAAACAGAGGCGTTTGGAGCAGATCCTCAGATCCCAAGAACAAGGTTCTAAGGTCATAATATTTTGTTCCACAAAGAGGTTATGTGACCAGCTTGCTCGTAGTATTGGCCGGACTTTTGGGGCTGCTGCAATTCATGGGGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAGTTTCGGAGTGGGAAGTCACCAATTCTAGTTGCCACTGATGTTGCAGCTCGTGGGCTTGATATTAAGGATATAAGGGTGGTGATCAATTATGATTTCCCCACCGGAATTGAGGACTATGTGCACCGAATAGGAAGAACTGGAAGGGCAGGTGCTACTGGAGTGTCATATACCTTTTTCTCTGAGCAGGACTGGAAACATGCTGGTGATTTAATCAAAGTTTTGGAGGGTGCTAATCAGCACGTGCTTCCAGAGTTAAGACAGATGGCTTCGCGTGGGCCACCAAACTTTGGAAAGGATCGGGGTGGGATGAGTCGGTTTGACTCTGGTAGTGGTGGTGGGGGGCGTTGGGATACTGGTGGTCGTGGTGGCATGAGGGATGGTGGCTTTGGTGGTCGTGGGGGTGGCATGAGGGAGGGTGGCTTTGGGGACGTGGTGGCGGGATGA 897 0.4738 MKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPCRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKAITQFVEVVPQMEKQRRLEQILRSQEQGSKVIIFCSTKRLCDQLARSIGRTFGAAAIHGDKSQGERDWVLSQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMASRGPPNFGKDRGGMSRFDSGSGGGGRWDTGGRGGMRDGGFGGRGGGMREGGFGDVVAG 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1176 298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 215 IPR027417 -
Ssu1g1176 298 CDD SF2_C_DEAD 81 210 - -
Ssu1g1176 298 MobiDBLite consensus disorder prediction 239 298 - -
Ssu1g1176 298 Gene3D - 71 243 IPR027417 -
Ssu1g1176 298 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 67 IPR014001 -
Ssu1g1176 298 Pfam Helicase conserved C-terminal domain 93 201 IPR001650 -
Ssu1g1176 298 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 265 - -
Ssu1g1176 298 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 96 240 IPR001650 -
Ssu1g1176 298 Gene3D - 1 70 IPR027417 -
Ssu1g1176 298 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 13 21 IPR000629 -
Ssu1g1176 298 SMART helicmild6 117 201 IPR001650 -
Ssu1g1176 298 Pfam DEAD/DEAH box helicase 2 56 IPR011545 GO:0003676|GO:0005524
Ssu1g1176 298 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1176 Ssu-Chr1 25846599 25849156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1176 9 239 Eukaryotic Initiation Factors Gene Family AT3G19760 36.638 9.65e-45 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1176 K12823 - gmx:100806371 472.626