Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1175 ATGGCAACAGCGGAGGCAGCTTCTGCTGGTCTTGGTCCCAGATATGCACCTGATGATCCTACCCTTCCACAGCCATGGAAGGGGTTGATTGATGGCAGCACTGGTTTGTTATACTATTGGAATCCTGAAACCAATGTTACGCAATACGAAAAACCAGCTTCCTTGACCCCGCCCGTGCCTTCGGGCCCTGGGCCGAGCTTGGCGCCTATACCGGGGGCTCACACAATGCAGGCTGGTGGGATGGTGCAGCAGCACGGGCAGCAATTGCTGCAAGTGCAACCCTCACAACAGCAGGTGGGTCACCTTGCCCAACAGCATGGGCAATCGATGCTGCCGCAGCAACAGCAGCAGCAGAGTCCACACGTGGCGCAGGTCGCTCAGCAGCAGCCATCTCAGGGTGCTCAGTCTGCACAGCAGCAGAACCAACAGATGGCACAGTCAGTGCCACAGCCTGGGTTACATCAAGCCAGGCAGCAAATGATGCAGTCCCAAGGGCAGCCAATGATGCAGCAGCCTCAAGGACAGCAAATGCATCATCAGATGCCATCACAGGCGATCCATTCCCAGCATTTTGCGCAAGGAACACCTCAGGATCATGGCTCACATATTGTACAACCGCAAGCGCATCAATTCACTCCGCAAAACATGCATTATATGACGTATCAGCAAAACGTGATTACATCCAGGCAACCAAACTCCCAGCACATTCAGCCAAACATGGTCTCACCTGGGCAACCTAACTCCCAGCAGGTTCAGCATAACGTGCATGGTCAGCCCTTTGAAAATCAACAAACAGCATTTCCAAAGGTAGAGGAAGCGGAGTTTAAAAATGGAAGCCAGGTTGGACTTTCGCCATCCCAGTATCCACAAAGGAGTACCTTACCTGTTCAGAACAACCAAAGCATTCCTGCTGAAGTTGGTTCTGGTCAAGTACCTAATGTAGGTGTTAATGCTGGCCAACCACAGCAATTCAGGGCCTTATCAGGCAGTATGCAACAAACACCCTCTGCAATGCCATTGCAGCAGGGTGGATCTGATTTATATTACCAACATGGTCCCACCTTTCATAACCAGATGAGCCCAGGAATGATGCACGGTCATCCATCCAATGTCCATCCTGCTGGCCAAAAGATGGGTCATGAGGATAATTTACGTGGTAGAGCAGGGAGTGAATATTACTATAATTCTAACAAAGATATGTCAACAATCGGTCGGCAGCAGCCAGATATGACTCAAATACCTACTCCGAGAAATCAGCAGGATATGAGGATTGGCAATACTCCTTTTCAAAATGTAATGCCTAGTGGAAGTGGAAGTGGTATTGCTGGGAATGCTATGCATGGCATGTTTGCTCCTCCAATAGGAGGACCTTCACCTCTCTCTACTAACTCTTTGATGAGGCCTCCATTCATGGGATCTTCAGATGTTACTGATCTCTCACCAGTTGAAATTTACTGTCAGCAACATGAAGTTACAGCAACGGGTGACAATATTCCACATCCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAgagatattgagagagATATATTCTGCTGGCTTCTCAAATCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATAGTAGCAATTGCCAAAACAGGCTCTGGGAAAACATTAGGCTACTAA 1674 0.4857 MATAEAASAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPASLTPPVPSGPGPSLAPIPGAHTMQAGGMVQQHGQQLLQVQPSQQQVGHLAQQHGQSMLPQQQQQQSPHVAQVAQQQPSQGAQSAQQQNQQMAQSVPQPGLHQARQQMMQSQGQPMMQQPQGQQMHHQMPSQAIHSQHFAQGTPQDHGSHIVQPQAHQFTPQNMHYMTYQQNVITSRQPNSQHIQPNMVSPGQPNSQQVQHNVHGQPFENQQTAFPKVEEAEFKNGSQVGLSPSQYPQRSTLPVQNNQSIPAEVGSGQVPNVGVNAGQPQQFRALSGSMQQTPSAMPLQQGGSDLYYQHGPTFHNQMSPGMMHGHPSNVHPAGQKMGHEDNLRGRAGSEYYYNSNKDMSTIGRQQPDMTQIPTPRNQQDMRIGNTPFQNVMPSGSGSGIAGNAMHGMFAPPIGGPSPLSTNSLMRPPFMGSSDVTDLSPVEIYCQQHEVTATGDNIPHPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGY 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1175 557 MobiDBLite consensus disorder prediction 94 202 - -
Ssu1g1175 557 Gene3D - 16 55 - -
Ssu1g1175 557 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Ssu1g1175 557 Pfam DEAD/DEAH box helicase 527 555 IPR011545 GO:0003676|GO:0005524
Ssu1g1175 557 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 296 557 - -
Ssu1g1175 557 CDD WW 23 52 IPR001202 GO:0005515
Ssu1g1175 557 Gene3D - 475 557 IPR027417 -
Ssu1g1175 557 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Ssu1g1175 557 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 503 531 IPR014014 GO:0003724
Ssu1g1175 557 MobiDBLite consensus disorder prediction 1 27 - -
Ssu1g1175 557 MobiDBLite consensus disorder prediction 50 74 - -
Ssu1g1175 557 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 296 557 - -
Ssu1g1175 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 557 IPR027417 -
Ssu1g1175 557 SMART ww_5 21 54 IPR001202 GO:0005515
Ssu1g1175 557 Pfam WW domain 22 52 IPR001202 GO:0005515
Ssu1g1175 557 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1175 Ssu-Chr1 25842116 25846251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1175 491 554 Eukaryotic Initiation Factors Gene Family AT3G19760 40.625 4.08e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1175 K12823 - gmx:100806371 835.484