Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1174 ATGGAAGCTGAGGCTGCCACTGCTCCACAGTTAGCACTCGCCGACACAGACATCAACTGGGACAGACACGGATGCAAGTGGCCGGCTCAGGACTCTCCCACCGTGCGAGGAATCTCTGTGTTCACTCGCATTCTGCGGAGCGATGGCATTCCCGGAATCTTCAGAGGTTTCGGCACTTCCGCCATTGGTTCAATGCCGGGTAGGGTCCTCGCCCTCACGTCTCTCGAGGTGTCGAAGGACGTCATCTTAAAACACACGCAAGGCAGAGACATTCCAGAAGCTTCGCGCGTTGGCCTCGCCAATGGAGTCGCTGGCATGCTGTCCAATTTGGTTTCTTGTGTCTACTTTGTGCCTTTGGATGTGATTTGTCAGAGGCTAATGGTACAGGGTCTTCCGGGGACCACGTGTTGTAGAGGGCCGTTTGATGTTGTTCGTAAAGTTGTGAAGGCTGAGGGGTTTCGTGGCTTGTATAGGGGTTTTGGATTAACGGCTGTAACCCAGTCCCCTGCATCTGCACTTTGGTGGGGTTCATATGCTGCTGCACAACACCTAATTTGGAGGAGTTTGGGCTACAAAGATGATTCGGGGAACAAACCTTCACATGTGGAAATGGTAACAGTTCAGGCTACTGCTGGGATGGTGGCTGGTGCTTGTTCCTCTGTTATCACCACTCCCATAGATACAGTTAAAACACGTCTTCAGGTTATGGACAACTATGGTTCTGGAAGACCATCAGTACTGAAGACAGCAAAAACTCTCCTCAAGGAAGATGGATGGTGGGGATTTTACAGGGGGTTTGGACCAAGATTTTTAAACATGTCACTTTATGGAACAACGATGATTGTTACTTATGAACTGATAAAGAGATTATCGGTTCAATCAAGTCTGAGGTCTTTTACTTAA 903 0.4928 MEAEAATAPQLALADTDINWDRHGCKWPAQDSPTVRGISVFTRILRSDGIPGIFRGFGTSAIGSMPGRVLALTSLEVSKDVILKHTQGRDIPEASRVGLANGVAGMLSNLVSCVYFVPLDVICQRLMVQGLPGTTCCRGPFDVVRKVVKAEGFRGLYRGFGLTAVTQSPASALWWGSYAAAQHLIWRSLGYKDDSGNKPSHVEMVTVQATAGMVAGACSSVITTPIDTVKTRLQVMDNYGSGRPSVLKTAKTLLKEDGWWGFYRGFGPRFLNMSLYGTTMIVTYELIKRLSVQSSLRSFT 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1174 300 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 35 293 - -
Ssu1g1174 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 96 184 IPR018108 -
Ssu1g1174 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 290 IPR018108 -
Ssu1g1174 300 SUPERFAMILY Mitochondrial carrier 38 286 IPR023395 -
Ssu1g1174 300 Pfam Mitochondrial carrier protein 207 292 IPR018108 -
Ssu1g1174 300 Pfam Mitochondrial carrier protein 100 186 IPR018108 -
Ssu1g1174 300 Pfam Mitochondrial carrier protein 37 85 IPR018108 -
Ssu1g1174 300 PANTHER OS01G0329400 PROTEIN 35 293 - -
Ssu1g1174 300 Gene3D Mitochondrial carrier domain 22 297 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1174 Ssu-Chr1 25824064 25826782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1174 38 290 Chloroplast and Mitochondria Gene Families AT5G15640 51.373 1.63e-89 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1174 K15121 - gmx:112997745 523.087