Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1166 ATGGAACAGTACGAGAAGGTGGAGAAGATAGGCGAGGGAACATACGGCGTCGTTTACAAGGCCCGCGACCGCGTCACCAATGAGACCATCGCGCTCAAGAAGATTCGCCTCGAGCAGGAGGACGAAGGCGTTCCCAGCACCGCCATTCGCGAGATTTCTCTCCTGAAAGAAATGCAGCATAGGAACATCGTTAGGTTGCAGGATGTAGTGCACAGTGAGAAGCGATTGTATCTGGTTTTTGAGTATCTGGACTTGGATCTAAAGAAACACATGGATTCATCTCCAGAGTTTGTGAAAGATCCGCGGCAAGTAAAAATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAGTTCTTCATCGAGACTTGAAACCACAGAATTTGTTGATAGATCGCCGTACTAATTCACTAAAGCTTGCAGATTTTGGATTGGCTAGGGCGTTTGGCATTCCTGTCAGGACATTTACACATGAGGTGGTGACATTATGGTACAGAGCTCCAGAAATATTGCTTGGATCTCGTCATTATTCTACCCCAGTTGATGTTTGGTCAGTGGGATGTATATTTGCAGAGATGGTAAACCGACGACCCCTATTCCCTGGGGACTCTGAGAttgatgaattatttaaaatattcagAATCTTGGGCACACCAAATGAAGACACATGGCCTGGAGTAACTTCATTGCCTGATTTTAAATCAACATTTCCTAAATGGCCACCTAAGGACCTAGCAACTGTGGTTCCAAATCTTGATCCAGCTGGTCTTAATCTTCTTTCTGTAAGTGCAAGATGTGATatagtattctttttcattgcCATTATTAAAAATAGCTCAAACAAGTTTGTAGTTCAACTGCCCCCAGCCTTGGTCTCCAAGGCTGGGGTGTGTGAACTGTGA 915 0.4306 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFVKDPRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNRRPLFPGDSEIDELFKIFRILGTPNEDTWPGVTSLPDFKSTFPKWPPKDLATVVPNLDPAGLNLLSVSARCDIVFFFIAIIKNSSNKFVVQLPPALVSKAGVCEL 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1166 304 CDD STKc_CDK1_CdkB_like 4 265 - -
Ssu1g1166 304 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Ssu1g1166 304 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Ssu1g1166 304 SMART serkin_6 4 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1166 304 Pfam Protein kinase domain 4 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1166 304 ProSiteProfiles Protein kinase domain profile. 4 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1166 304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Ssu1g1166 304 Gene3D Transferase(Phosphotransferase) domain 1 86 271 - -
Ssu1g1166 304 PANTHER - 3 268 - -
Ssu1g1166 304 PANTHER CELL DIVISION PROTEIN KINASE 3 268 - -
Ssu1g1166 304 SUPERFAMILY Protein kinase-like (PK-like) 1 265 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1166 Ssu-Chr1 25714674 25720931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1166 1 265 Core Cell Cycle Gene Families AT3G48750 87.547 1.50e-177 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Ssu1g1166 Pkinase 1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1166 K02206 - gmx:100782865 533.487