Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1164 atGTGCAGCAGCATCTTTGGGCCAACAACCATGGACAATTACCAAGGTGATTTAACTGACATAGTCCGAGCCAGTGGTGGAGCATATGGTAGCAGCAGCAGCTGCAGCACGGGCACAGTTTCATCATCTGAATTACCTACCACATCTCATCAACGTCATACTCACACCCTCTCTCATAATGATCACTGGCACCAACAGCAACACTTCTCTTCTTCTGACCACATCAGTTTCTCTTCTGTGCTTGAAGACCCCAGAGGAGGCACCAACTTTGGTGATCCTTTCTCAACCATGCGAGATCCCTTCCTTCAGGAGCTTGACATGCCTGCAGGTTCTGCCTACTTCACTGGGGGCTTGGAAGAAGCAGCTGCAAGTTTTGGTGCCCCTTCTGGTGGTGTTAGTGGTAACATAACCAATATCAATACTAATACTAATGCTAGTACTAGTACTGTTTTTGGTGCGCACAAGATTCATGAGGAACATGACATGAGAAGACCTTGTAAAAACATATTCTCAAACATGATTCAGATCTCTCCCAATGCAAAGTTACCCGTCTCACCCTATGATTCCACGGCCATGGCACCTTCTCCAAGGGCAATTAAGCCTCCTGCTGTGGTTTCACCCAACATGGTCAGTGCAAACTCCCCCAAGGATTGCCTTGTGGACACCACAGGGGTGCAGATCTCATCTCCACGGAATCCGGGTCTTAAACGAAGGAAGAACCAGGCCAAAAAGGTGGTTTGTATTCCTGCACCAGCTGCTGCAAACAACAGACAAACTGGAGAGGTAGTTCCGTCAGATTTGTGGGCTTGGAGAAAATACGGTCAGAAACCCATTAAAGGTTCACCTTATCCCAGGGGTTATTACAGATGCAGCAGCTCAAAGGGTTGCTCTGCGAGGAAGCAAGTTGAGAGGAGCAGGACAGACCCAAACATGTTGGTTATTACATACACGTCAGAGCACAACCATCCATGGCCAACTCAAAGAAATGCTCTGGCTGGTTCAACCCGATCACAGCCATCGAAGAACAATGCTTCCAATTCAAAGAGTTCAGAAGGCTCAAACCCCCAAAAGGGCACAGGCAACAAAAGCAAAGGAAGAGCAGCAACAAGAGAGCAACAATAG 1122 0.4777 MCSSIFGPTTMDNYQGDLTDIVRASGGAYGSSSSCSTGTVSSSELPTTSHQRHTHTLSHNDHWHQQQHFSSSDHISFSSVLEDPRGGTNFGDPFSTMRDPFLQELDMPAGSAYFTGGLEEAAASFGAPSGGVSGNITNINTNTNASTSTVFGAHKIHEEHDMRRPCKNIFSNMIQISPNAKLPVSPYDSTAMAPSPRAIKPPAVVSPNMVSANSPKDCLVDTTGVQISSPRNPGLKRRKNQAKKVVCIPAPAAANNRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNNASNSKSSEGSNPQKGTGNKSKGRAATREQQ 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1164 373 Gene3D WRKY domain 238 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g1164 373 Pfam WRKY DNA -binding domain 266 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g1164 373 SMART WRKY_cls 264 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g1164 373 ProSiteProfiles WRKY domain profile. 259 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g1164 373 MobiDBLite consensus disorder prediction 30 69 - -
Ssu1g1164 373 MobiDBLite consensus disorder prediction 30 53 - -
Ssu1g1164 373 MobiDBLite consensus disorder prediction 308 367 - -
Ssu1g1164 373 MobiDBLite consensus disorder prediction 289 373 - -
Ssu1g1164 373 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 15 362 IPR044810 GO:0003700
Ssu1g1164 373 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 15 362 - -
Ssu1g1164 373 SUPERFAMILY WRKY DNA-binding domain 262 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g1164 373 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1164 Ssu-Chr1 25669921 25672468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1164 1 333 WRKY Transcription Factor Family AT2G34830 47.143 3.47e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu1g1164 WRKY 1.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1164 - - aprc:113852911 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1164 1 25669921 25672468 Ssu1g1164 1 25669921 25672468 ECH