Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1152 ATGTCTGTACCATCATCAAACAACAGATACCCATCAGGACGTCGTCCTCGCAGTCCTATAGAGGAAATAGAGATGCTAAGTGAGTTAAGTGACACTGAAGAAGATTATTCTAGTGATGAAGAAGAGAGCGATGGAGGAGGAGAAGAGAGGGGAGAAGCTTCTTCTAGCGATGAAGAAGAATCAGAACATATGGATGCATATGATGCTCCTTTGCCTCATGTTAATAGAGAAATTATTGTCCCAGTTGTTCCAGAGCCACCTGCACTTGCACCTAATGGTGGTGGCGCAAATGGCGTTCCAGTGATGCTGACTGATCCTAGTGTGTTTGATTGTTGTGTGTGTTTCGATACATTAAGCATTCCAGTCTACCAGTGCATCAATGGGCACATTATTTGTTCTCCCTGCTGTAGCAAGATTGCGCACAAGTGTCCCTTGTGCTCAATGTCCATCGGGGACAACCGTTGCCGAGCCATCGAGGCAGTGTTGGCATCGATAAAAACCACGTGCTCAAATGCAAGATACGGTTGTAACGCGATGGTGAGGTACAGTGAGAAACGTGAGCATGAGAAGACATGCGCCTTTGTACCATGTTCATGTCCGCAGCCGGGTTGCAACTGGCTTTCCGCTTCCAACCAATTGGGCCAGCACTTGAGCGAGGATCATTTGTTCTACTTAATATCCTTCGAATATGGCGAGTTTTTCCACGTGCCGTTGAGGCACAACAAGAGGCTTCTTGTTCTTCAAGCATCAACTGATGGCAAACTGTTTGTTATCAAGAATCAAATGGAGGATACGGAAAACGAAGTTTTTCTTTATCACATTGGGCCTAACTCGTCGGTCCCACAGTTTCACTTTGAAGTTAAGACTATGTCTGATGGTGAAGTTCTATTGCCCCAAACTCCCGTGGAGAGCACTCAAAACGGAACACTTGGGATTCCTTTATCACGATTAACGTTTTTTTGCATTCCACGTGAGATGTTTTCTCTTTCTAGATGGATCCATCTGCAGTTTCGAATTACTACTGTGAGTGGTGCTACACATTCGGACGACGGCCCCTCTATCTCTTAG 1068 0.456 MSVPSSNNRYPSGRRPRSPIEEIEMLSELSDTEEDYSSDEEESDGGGEERGEASSSDEEESEHMDAYDAPLPHVNREIIVPVVPEPPALAPNGGGANGVPVMLTDPSVFDCCVCFDTLSIPVYQCINGHIICSPCCSKIAHKCPLCSMSIGDNRCRAIEAVLASIKTTCSNARYGCNAMVRYSEKREHEKTCAFVPCSCPQPGCNWLSASNQLGQHLSEDHLFYLISFEYGEFFHVPLRHNKRLLVLQASTDGKLFVIKNQMEDTENEVFLYHIGPNSSVPQFHFEVKTMSDGEVLLPQTPVESTQNGTLGIPLSRLTFFCIPREMFSLSRWIHLQFRITTVSGATHSDDGPSIS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1152 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 37 342 - -
Ssu1g1152 355 MobiDBLite consensus disorder prediction 26 64 - -
Ssu1g1152 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 217 IPR013083 -
Ssu1g1152 355 MobiDBLite consensus disorder prediction 1 64 - -
Ssu1g1152 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 37 342 IPR044286 -
Ssu1g1152 355 CDD RING-HC_SIAHs 109 147 - -
Ssu1g1152 355 SUPERFAMILY TRAF domain-like 164 309 - -
Ssu1g1152 355 Pfam Seven in absentia protein family 154 306 IPR018121 GO:0005737|GO:0006511|GO:0007275
Ssu1g1152 355 ProSiteProfiles Zinc finger SIAH-type profile. 164 222 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1152 Ssu-Chr1 25442107 25444925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1152 96 221 C3H Transcription Factor Family AT2G41980 35.156 3.13e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1152 K04506 - gmx:102662420 324.324