Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1151 ATGACTTTTCCCTTATCTTGTGTTAATAGAGAGGTTATTGTCACTGCTGTTCCAGTCCCACGTGCACCTTCACCAAATGGTGGTGATACAAATGATGTTCCTGTTATGCTAACTGATCCCGACGTGTTTGATTGCTGTGTGTGTAATGATACATTAAGTATTCCAGTTTACCAGTGCATCAATGGGCACATTATTTGTTCTCCCTGCTGTAGCAAGCTCGGGCAAAAGTGTTTCTTGTGCTCGATGTTCATCGGGGACAACCGTTGCCGAGCCATCGAGGCAGTGTTGGCATCGATGCAAACCGTGTGCTCAAATGCAAGATATGGTTGTAATGCGGTGGTGAGGTACAGTGAGAAACGTGAACATGAGAAGACATGCGCCTTTGTGCCATGTTTATGTCCGCGGCCACGTTGCAACTGGATTTCCAATTCCAACAAATTGGGCCAGCACTTCAGCGAAAAGCATTCCTTCAAAAGAATACCATTCAAATATGGTGTGTTTTTCGACGTTTCGTTGAGGCACAACAAGAGGACTCGTATTCTTCAAGCGCTAAGTGATGGCAAACTGTTTGTTATCAGCAATCAGATGAGGGAGACAGAAAATTCATTGTTTCTTTGTCACATTGGGCCCAACTCATTGGTCCCGCAGTTTCATTATGAAGTTAAGACTAAGTCTGATGGTGCAGTTCTGTTGCCCCGAACTTCTGTGGAGAGCACTCAAGGAGGAAAATTTGTGTTTCCTTCAGCACCATTAAGGTTTTTTTACATTCCATGTGagatgttttctatttttggacGGATCAAATTGCAATTTCGGATTACTACGACTGAACACTTGTCAAGGTGGGGGAGGAAGGCGAGCCAATTGCTTCTTGATGAGGTAGAGTTTGTCGGAGCAGTGATTGACTTAGAGGATGGTGTACCAGTTGGGGTGGTTGTTAACATGCTTGTCGGTGGTGAGGAGGACGTCCACGATGGCCAGGATTTGATCGCGAACTCGTGCGTGCCCATCAAATCGCTATTCTTGAGAAGCTTCAGTGCATGTTGCTCTGCATTCTGGTTGCGGGAAAGCTTTGCTAAGGTTGTAGAGTCTAAGTCTAGCTCCACTATAGAGGAAGACATTTTGAGTAGCAACACAGAAAAGGTCAAAACAAAAGATACAGAATGA 1167 0.4422 MTFPLSCVNREVIVTAVPVPRAPSPNGGDTNDVPVMLTDPDVFDCCVCNDTLSIPVYQCINGHIICSPCCSKLGQKCFLCSMFIGDNRCRAIEAVLASMQTVCSNARYGCNAVVRYSEKREHEKTCAFVPCLCPRPRCNWISNSNKLGQHFSEKHSFKRIPFKYGVFFDVSLRHNKRTRILQALSDGKLFVISNQMRETENSLFLCHIGPNSLVPQFHYEVKTKSDGAVLLPRTSVESTQGGKFVFPSAPLRFFYIPCEMFSIFGRIKLQFRITTTEHLSRWGRKASQLLLDEVEFVGAVIDLEDGVPVGVVVNMLVGGEEDVHDGQDLIANSCVPIKSLFLRSFSACCSAFWLRESFAKVVESKSSSTIEEDILSSNTEKVKTKDTE 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1151 388 Pfam Seven in absentia protein family 88 230 IPR018121 GO:0005737|GO:0006511|GO:0007275
Ssu1g1151 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 151 IPR013083 -
Ssu1g1151 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 29 278 - -
Ssu1g1151 388 ProSiteProfiles Zinc finger SIAH-type profile. 98 156 IPR013010 GO:0008270
Ssu1g1151 388 SUPERFAMILY TRAF domain-like 101 241 - -
Ssu1g1151 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 29 278 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1151 Ssu-Chr1 25425413 25431791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1151 8 155 C3H Transcription Factor Family AT2G41980 28.477 8.85e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1151 K04506 - gmx:102662420 365.54