Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1142 ATGGTTCTGAAACTTGTTTATATCATCAATTTGATGATATGGAGCATATATCCACTAACATATGCACGGCATCAGAATCAGACTATAGCACAACCCGGTTGTAAATCGGAATGTGGAAGTGTTTCCATTCCTTACCCTTTCGGAATGGAAGGCTCCAAATGCTATGCAAACGTGTGGTTTGAAATAAAATGCAACAGTACTTCTCAAGGTGAGAAACCTTACCTCAAGTCTATAGATTTGGAGGTAATATTCATTGATATTTTCAACAGTAGGGTTTGGATCAAGAATCCGATTTTCGGTACTGGGAAGAACTGCGAAAGGATTGGTACAGGCATAAACCTGAGACGAGGTCCTTTCGTGTATTCCCAGGATTACAACTCATTTGTGGCCGTAGGTTGCCAAAACGCTGCTTTCTTGTGGTCAGACGGCTCGGAAGTTAGTGGTTGTGTGTCCATATGTGACGGCAAGCAGCAAGAAAATGTCAATAACATCAAGCTTGCAAGGTGTCGTGGCATGCACTGCTGCGGTACTTTACTGCCGTCGTATCTTTCAGAATATAATGTCACAACTGAAAATCTAAATAATGTGAAAAAGGTGATGGAAGGGTGCGCTTACGCGCTGATTGTAGCGGATGATAATAATCAGTTCCCGTTCAGTCACGACAAGTACAATTACACTATTGGGGACCTAAAGCATTTAAATGATGTTCCTGCTGTGCTCGAATGGGAGATTCTGAATGACATGCTCATCAACAATTCCGTGCTCAAAAATTCCATCCTCGGCCTCGGCGATCTCGGTGCAGATGATGAATATTATGTCCGCCGCCACTGCGATGTCTCTGATGTTACATCTCCACCCTCACAACACGGACACTCAGGTTGGAGATGTACCTGCGAATATGGCTTCCAGGGAAATCCCTACATTGAGGAAGGCTGCAAAGGGCCAGACAAGAAAAGTCGAGCAAAGTGGGCCATATTAGGAGTTTCTTCAAGCCTCGGAACcatcattttactttttggtttGTGGTGGTTGCATAAAGTTGTGAGGAAAAAGATAGCAAAGAAACGCAAAGAAAAGTTCTTCAAACAAAATGGAGGATTGTTGTTAGAACAAAGACTATCTTCTGATGAAGTTAGTGTTGATAGCATTAAACTCTTTAGCTTAAAGGACTTAGAGAAGGCCACTGATcactttaatataaatagagtaCTTGGAAAGGGAGGCCAAGGTACCGTTTACAAAGGGATGCTAGCAGATGGAAAAATTGTTGCAGTGAAAAAATTGAAGGTTAATGGAAAGGTTGAAGAATTCATCAATGAATTTGTCATTCTTTCACAAATTAACCATAGAAATGTAGTTAAGTTGTTAGGATGTTGTCTGGAGACTAAAATTCCTTTGCTTGTTTATGAATTCATTCCTAATGGTAACctttttgaatatttacatgGACAAAATGATGACTTACCAATGACATGGAATATACGTTTGAGAATTGCCACTGAAGTTGCTGGAGCTCTATTTTACTTACACGCAGCTGCTTCTCAGCCCATTTATCACAGAGACATCAAGgcaacaaatatattattggatGGGAAGTACAAGGCAAAAGTAGCAGACTTTGGTGCATCAAGAATGGTTTCCGTTGAAGCTACTCACCTCACGACTGCAGTTCAAGGAACTTTTGGATACTTGGACCCTGAATATTTCCATACTAGTCAATTTACAGAGAAGAGTGATGTCTACAGTTACGGAGTGGTTCTTGCTGAACTTTTAACTGGGCAAAAGCCAATATCCTCTGTGAAACACCAAGAACCTCAAAGTTTAGCGTCATATTTTGTCCTCTGTATGGAGGAAAATCGTTTGTCTGATATTGTTGATGAAAAAGTCATGAAGGAAGGGAAGAAAGAACACATCGTTGTAGTTGCCAATCTTGCAAGAAGATGCTTAGAGTTGAATGAGAGAAAACGACCAACTATGAAAGAAGTCACATTAGAATTGGAAAGCAtccaaaaattggaaaaacagTCTAATGCACAAGAATACCATGAAGAAATTGAGCTTGCTGGAATTGAAGACTGTCAATGTTGGGCTGCGTATTCTACAACTTCAAAGTCAGGGCAAACTTCAGACAGCAAAGCATCAACCTTGGAGATTATGCCTATTCAACAATAA 2172 0.3918 MVLKLVYIINLMIWSIYPLTYARHQNQTIAQPGCKSECGSVSIPYPFGMEGSKCYANVWFEIKCNSTSQGEKPYLKSIDLEVIFIDIFNSRVWIKNPIFGTGKNCERIGTGINLRRGPFVYSQDYNSFVAVGCQNAAFLWSDGSEVSGCVSICDGKQQENVNNIKLARCRGMHCCGTLLPSYLSEYNVTTENLNNVKKVMEGCAYALIVADDNNQFPFSHDKYNYTIGDLKHLNDVPAVLEWEILNDMLINNSVLKNSILGLGDLGADDEYYVRRHCDVSDVTSPPSQHGHSGWRCTCEYGFQGNPYIEEGCKGPDKKSRAKWAILGVSSSLGTIILLFGLWWLHKVVRKKIAKKRKEKFFKQNGGLLLEQRLSSDEVSVDSIKLFSLKDLEKATDHFNINRVLGKGGQGTVYKGMLADGKIVAVKKLKVNGKVEEFINEFVILSQINHRNVVKLLGCCLETKIPLLVYEFIPNGNLFEYLHGQNDDLPMTWNIRLRIATEVAGALFYLHAAASQPIYHRDIKATNILLDGKYKAKVADFGASRMVSVEATHLTTAVQGTFGYLDPEYFHTSQFTEKSDVYSYGVVLAELLTGQKPISSVKHQEPQSLASYFVLCMEENRLSDIVDEKVMKEGKKEHIVVVANLARRCLELNERKRPTMKEVTLELESIQKLEKQSNAQEYHEEIELAGIEDCQCWAAYSTTSKSGQTSDSKASTLEIMPIQQ 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1142 723 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 13 721 - -
Ssu1g1142 723 MobiDBLite consensus disorder prediction 703 723 - -
Ssu1g1142 723 Pfam Protein kinase domain 399 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1142 723 Gene3D Phosphorylase Kinase; domain 1 370 471 - -
Ssu1g1142 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Ssu1g1142 723 Gene3D Transferase(Phosphotransferase) domain 1 472 694 - -
Ssu1g1142 723 SUPERFAMILY Protein kinase-like (PK-like) 382 664 IPR011009 -
Ssu1g1142 723 ProSiteProfiles Protein kinase domain profile. 398 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1142 723 Pfam Wall-associated receptor kinase galacturonan-binding 34 95 IPR025287 GO:0030247
Ssu1g1142 723 CDD STKc_IRAK 404 669 - -
Ssu1g1142 723 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 721 IPR045274 GO:0007166
Ssu1g1142 723 SMART serkin_6 398 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1142 Ssu-Chr1 25091790 25112844 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1142 34 686 Receptor kinase-like Gene Family AT1G79680 42.582 5.93e-179 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Ssu1g1142 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1142 - - gmx:100799320 929.858