Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1140 ATGATTCTGAAATTCGTTCATATCATCATTTTGATAATATGGCCCATACATCTACAGGCATCTGCACAATCCTCAACTATGGCAAAACCTGGCTGTAATTCGCAATGTGGAGGTGTTGAAATTCCTTATCCGTTTGGAATGAACGGTTCGGAATGCTACGCAGACAAGTGGTTTGAAATAGAATGCAGAAACGGTTCACTTTCCACACCCGAACCTTCGGCTTCCATAGATGACAATCGGAAACCTTACCTGAAATCTATAGGAGTGGAGGTGACATTCATTGATGTCTCTGGAGGCACAGTTGATATCATGAATCCGATTTACCGTAGTAACTGCGGAACCAAAGGTGCTCGGCTAGTCAACAAACAGCTGGGAGGGAGCCCTTTCGTGTATTCCCAGGAACACAACAAATTCGTGGCCGCAGGTTGCAATAGTATTGCTCTTTTGCAGTCAAATGGGTCAGATGTTAGTGGTTGTGTGTCCATCTGTGACGACGACAACGATGATATCAGCAACCTTGGAAATACTGAATGCCATGGCAAGTCCTGCTGTGAGACTTCCCTGCCACAGTATCTATCAGAATATAACGCAACGATTAAAGGTTTAAATGAGAAACAAACGGGTCATCATTGTAGTTTCGCGATGATTGTACAAGATTATCATCGGTACTCGTACAACCACTACAACTACTACGACTCCTATTATCCTGTTGGTGGCGACCTGAAGGATTTAAATGACGTCCCTGCGGTGCTTGAGTGGGAAATTGTGAACAATTTGACCCTTAAACTCCCTGCAGATGCATACGCTGAGTGCCATGACACAAAAGTAACATCTTCACGATATAAAGGCTCAGGTCGGAGATGTTCCTGCAAATTGGATTCCAGTGGCAATCCCTACATTGCTGGAGGTTGTCGAGCTACTTCTCCGTATCCGTACTACGAAAAGACAAGTCGAGCAAAATCGATCATAACAGGAGTTTTTGCAAGCCTCGGATCTATCATCTTACTCCTTGTTTTATGGCGTTTGTATAaagttgtaagaaaaaaaatagtgaagaaaCGCAAAGAAAAATTCTTCAAACAAAATGGAGGATTGTTGTTAGAACAAAGATTGTCTTCTGGTGAAGTTAATGTTGATAAAGTCAAACTCTTCAGCTTAAAGGACTTAGAGAAGGCCACTGACCACTTTAATACGAATAGAGTACTTGGAAAAGGAGGCCAAGGTACTGTTTACAAAGGCATGTTAATAGATGGAAAAATTATTGCTGTGAAAAAATTTAAGGTTGAAGGAAAGGTTGAAGAATTCATCAACGAATTTGTCATTCTTTCACAAATTAACCACAGAAACGTGGTTAAGTTGTTAGGAAGTTGTTTGGAGACAGAAATTCCATTGCTTGTTTATGAATTCGTTCCTAATGGTAACCTTTTTGAGTACTTGCATGAACAAAATGAGGATTTACCAATGACATGGGATATGCGTTTGAGAATTGCCACTGAAGTTGCAGGAGCTTTATTTTACTTACACTCTGCTGCTTCTCAGCCTATTTATCATAGAGACATCAAgtcaacaaatatattattggatGAAAAGTATAGGGCAAAAATTGCAGATTTTGGTACATCAAGAATGGTTTCCATTGAAGCTACTCACCTCACTACAGTAGTTCAAGGAACTTTTGGATACTTGGACCCTGAATATTTCCATACCAGTCAATTTACAGAAAAAAGTGACGTTTATAGCTTTGGAGTAGTTCTTGTTGAACTCTTAACAGGGCAAAAGCCAATATCCTCCCTAAGACCAATGGAAGCCAAAAGTTTGGCTTCATATTTCATTCTTTGTATAGAGGAAAATCGTCTGTTTGATATTATTGATGAAAGAGTCATGAAGGAAGGGCTGAAAGAACATATCATTGCAATTGCCAATCTTGCAAGTAGATGTTTAGAGTTGAATGGGAAGAAACGACCAACTATGAAGGAAGTCACATTGGAATTAGAAGGTATCCGAAAATTGGATAGGAAGTCAAATACACAAGAAACACAGGACGAACTTGAGCTTGTTCGAGTTGAAGACTATCAATCTTGGGCTGAGTATTCTACTACCTCAAATATAATGTCAACTCTAGATCTAAATAGCAGAACACCAACCTTGGAGGATATACATATTCTTACCATATAA 2175 0.3899 MILKFVHIIILIIWPIHLQASAQSSTMAKPGCNSQCGGVEIPYPFGMNGSECYADKWFEIECRNGSLSTPEPSASIDDNRKPYLKSIGVEVTFIDVSGGTVDIMNPIYRSNCGTKGARLVNKQLGGSPFVYSQEHNKFVAAGCNSIALLQSNGSDVSGCVSICDDDNDDISNLGNTECHGKSCCETSLPQYLSEYNATIKGLNEKQTGHHCSFAMIVQDYHRYSYNHYNYYDSYYPVGGDLKDLNDVPAVLEWEIVNNLTLKLPADAYAECHDTKVTSSRYKGSGRRCSCKLDSSGNPYIAGGCRATSPYPYYEKTSRAKSIITGVFASLGSIILLLVLWRLYKVVRKKIVKKRKEKFFKQNGGLLLEQRLSSGEVNVDKVKLFSLKDLEKATDHFNTNRVLGKGGQGTVYKGMLIDGKIIAVKKFKVEGKVEEFINEFVILSQINHRNVVKLLGSCLETEIPLLVYEFVPNGNLFEYLHEQNEDLPMTWDMRLRIATEVAGALFYLHSAASQPIYHRDIKSTNILLDEKYRAKIADFGTSRMVSIEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLVELLTGQKPISSLRPMEAKSLASYFILCIEENRLFDIIDERVMKEGLKEHIIAIANLASRCLELNGKKRPTMKEVTLELEGIRKLDRKSNTQETQDELELVRVEDYQSWAEYSTTSNIMSTLDLNSRTPTLEDIHILTI 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1140 724 SUPERFAMILY Protein kinase-like (PK-like) 377 664 IPR011009 -
Ssu1g1140 724 CDD STKc_IRAK 402 667 - -
Ssu1g1140 724 Pfam Protein kinase domain 397 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1140 724 Pfam Wall-associated receptor kinase galacturonan-binding 32 101 IPR025287 GO:0030247
Ssu1g1140 724 ProSiteProfiles Protein kinase domain profile. 396 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1140 724 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 15 721 IPR045274 GO:0007166
Ssu1g1140 724 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 15 721 - -
Ssu1g1140 724 Gene3D Phosphorylase Kinase; domain 1 368 469 - -
Ssu1g1140 724 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672|GO:0006468
Ssu1g1140 724 SMART serkin_6 396 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1140 724 Gene3D Transferase(Phosphotransferase) domain 1 470 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1140 Ssu-Chr1 24875330 24893867 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1140 7 668 Receptor kinase-like Gene Family AT1G16130 43.447 9.48e-180 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Ssu1g1140 Pkinase 9.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1140 - - gmx:100775935 963.37