Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1139 ATGATTTTGCAACTAGCATTTCATATCATTTTGATAATATGGCCGATATCCCCTCTGGCATCTGCACAAAATCTGATCACAACAAAACCTGGTTGTAATTCAACATGTGGAGGTGTTGACATCCCTTACCCTTTTGGAATGAAAGATCCCAAATGCTACGCAGACGGGGGGTTTGAAATAGAATGCAGAGATACTTCTGAAGGTCAAAAACCTTACTTGAAGTCTTTAAATCTGGAGgtgacattattttatttgaaccaAGGCCTGGTTGACATCATGAATCCAATTTTCCGTTGGAACTGCGAAAGCAAAAACGCCAAGCCAGTAGTAAACCTGAGAGGAAGCCCTTTCGCGTATTCCCAGAGCAGCAACAAATTTATGGCCGTTGGTTGCAACAACCTTGCTTTTTTGCAGTCAAATGGGACAGCTGTTGGTGGTTGTGTGTCAATTTGTGAAGACAACGAAGAAGTTAACGATAATGTCAACATGGGAAGCGATGATGGTTGCCATGGCAGGTACTGCTGCGAGACTTCACTGCCCAGCTATCTTCCAGAATATAACGCAACACTACAAGATTTAAAGAATCACAGCAGTACTGTTAGTCATGATCAGTGTAGTTCTGCGTCAATTGTAAATCAGTACTGGCCCCAGAATTACTATGCGTCTGATTTATCGATTCAGAGATTAAGTGAGCTAAAGAAGATGGATTATGTTCCTGCGGTGCTTGAGTGGGACCTTTGGAAGGTGCTTGCCAATTCTACCCTTCAACTCCCCTTAGGTGTCAACTGCTATAATCTTACATCTTCGCCAAGCACAGGCCCCAGTTGGACGTGTCAGTGCCCCGTTGGCTTCTATGGCAATCCCTTCGTTTCTGAAGGCTGCGTTGTCCGGCCAGGGTTCTTTGACAAGAATAGTCGAGTGAAGAGGTGGGCTATAGTTGGAGTTTTGTCAAGCCTTGGATCTATCATTTTCCTCCTTGGTCTATGGTTGTTGTATAAAGCTGTAAGGAAGAGAGTGATAAAGAAACGCAAacaaaaattcttcaaaaagaatGGTGGTTTGCTGTTACAACAAAGGATGTCATCTGGGGAAGTTAATGTTGATAAAGCTATTCTCTTCAGCTTAAATGATTTAGAGAAGGCCACTGACCACTTTAACATGAACAGAATTCTTGGAAAGGGAGGCCAAGGCACTGTTTACAAAGGCATGCTAGTAGATGGTAAAATTATTGCAGTGAAAAAGTTTAAGGTGGAAGGAAATGTTGAGGAATTCATCAACGAGTTTGTCATTCTTTCACAAATTAACAATAGAAACGTGGTCAAGCTGTTAGGATGTTGTTTGGAGACCGAAATTCCCTTACTTGTTTATGAATTCATTCCTAATGGTAACCTTTTCCAATATTTACATGACCAAAATGAGGACTTACCAATGACATGGGATATGCGTTTGAGAATTGCAACTGAAATTGCAGGAGCTCTATTTTACTTGCACTCAGTTGCATCTCAACCCATTTATCATAGAGACATCAAATCCACAAATATACTATTGGATGAAAAGTATAGGGCAAAAATTGCAGACTTTGGAGCATCCAGAATAATTTCCATTGAAGCAACTCATCTTACCACAGTCGTTCAAGGTACTTTTGGATACTTGGATCCTGAATATTTTCACACTAGTCAATTTACAGAAAAAAGTGATGTCTACAGTTTTGGAGTAGTTCTTGCTGAACTTTTAACAGGCCAAAAACCAATATCCTCAGTAAGATCTGGGGAATCCAAGAGTTTAGCTTCATATTTTGTTGAGTGTGTGGAGGAGGATAATCTGTTTGACATTATTGACAAAAGAGTCGTGAAGGAAGCAGAGAAGGGGCAAATCATTGCAGTTGCTAATCTTGCAAATAGATGCTTAGAGTTGAATGGAAAAAAACGCCCAACTATGAAAGAAGTTACACTTGAATTAGAAAGGATCCAGAGATTGGATAAGAAATCAAATGCAGAGCAAAACCATGAAGAAATTGAGCTTGCTAGAATTGATGATTACCAACCTTGGGCCGGATATTCTATGTCTTCATTCCCAACTCTAAGCAGTGAAACAATCTCATCAGACTCAGAGGTTATACCtattgttactttaaaataa 2139 0.3941 MILQLAFHIILIIWPISPLASAQNLITTKPGCNSTCGGVDIPYPFGMKDPKCYADGGFEIECRDTSEGQKPYLKSLNLEVTLFYLNQGLVDIMNPIFRWNCESKNAKPVVNLRGSPFAYSQSSNKFMAVGCNNLAFLQSNGTAVGGCVSICEDNEEVNDNVNMGSDDGCHGRYCCETSLPSYLPEYNATLQDLKNHSSTVSHDQCSSASIVNQYWPQNYYASDLSIQRLSELKKMDYVPAVLEWDLWKVLANSTLQLPLGVNCYNLTSSPSTGPSWTCQCPVGFYGNPFVSEGCVVRPGFFDKNSRVKRWAIVGVLSSLGSIIFLLGLWLLYKAVRKRVIKKRKQKFFKKNGGLLLQQRMSSGEVNVDKAILFSLNDLEKATDHFNMNRILGKGGQGTVYKGMLVDGKIIAVKKFKVEGNVEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFQYLHDQNEDLPMTWDMRLRIATEIAGALFYLHSVASQPIYHRDIKSTNILLDEKYRAKIADFGASRIISIEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGQKPISSVRSGESKSLASYFVECVEEDNLFDIIDKRVVKEAEKGQIIAVANLANRCLELNGKKRPTMKEVTLELERIQRLDKKSNAEQNHEEIELARIDDYQPWAGYSMSSFPTLSSETISSDSEVIPIVTLK 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1139 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Ssu1g1139 712 SUPERFAMILY Protein kinase-like (PK-like) 370 651 IPR011009 -
Ssu1g1139 712 Gene3D Transferase(Phosphotransferase) domain 1 459 681 - -
Ssu1g1139 712 Gene3D Phosphorylase Kinase; domain 1 350 458 - -
Ssu1g1139 712 ProSiteProfiles Protein kinase domain profile. 385 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1139 712 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 15 709 - -
Ssu1g1139 712 Pfam Wall-associated receptor kinase galacturonan-binding 32 79 IPR025287 GO:0030247
Ssu1g1139 712 CDD STKc_IRAK 391 656 - -
Ssu1g1139 712 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 15 709 IPR045274 GO:0007166
Ssu1g1139 712 Pfam Protein kinase domain 386 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1139 712 SMART serkin_6 385 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1139 Ssu-Chr1 24854944 24858526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1139 32 657 Receptor kinase-like Gene Family AT1G16130 43.620 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Ssu1g1139 Pkinase 4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1139 - - gmx:100798794 1036.56