Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1126 ATGGCCCATAAGGAATTCAAaaTATTCAGCGAGTGCCCACATCCAGATGAAAGGCAAAGACGTCAAATAGCCAAAGATCTTGGGCTTGAGCCAAAACAAGTGAagttttggtttcaaaataagaGAACTCAAAGAAAGACTCAAACTGAGCGAGCAAATAATAATGCTCTTCGTGTTGAGAATGAAAGAATGCACAACGAAAACCTCGTAATCAAAGAGGCATTGAAGAATATAATTTGCCCATCTTGTGGGGGTCCACCTTATGGCGATGAAGGGCATGAACATTCTCTTAAACAACTTCGTCTCGAAAATGCTCGTCTAAAGGAAGAGCACGAGAAAGTGTCTAGCCTTCTTGCAAGGTACTTGGAGAAACAAATGTCACCCCCTGAGTTACAACAAGCTTTTATTCCTATCACAGGATCAAGTTCACATGCTCCAGCACATGGAAATTCACTAAACCAAGAGATTGATGGAAGTCTATGTCTTGATCGAAGTCTTGGTAAGCAAATTATGGACGGTGACCATTTATTGTCTAACTCATTGGGAAGTGAAGGTATAGAAAAAGCCCTTATGTCAAAGGTTGCTATTACCGCAATAGAAGAATTAGTTAGGCTTCTTCGGATTAATGAGCCTTTTTGGATCAAGTCATCAACTCAAGATGGGAAGCTCAGTCTTCaccatgaaaattatgaaaaaatattcccAAGGACCAATCATTTCAAAGGTGCCAACGTGCGTGTAGAAGCAACAAAAGATTCAGGAATAGTGAGCATCAATAGTATTCAACTGGTTGACATGTTTCTAGATTCGGACAAATGGGTTAATCTTTTCCCAACAATTGTTACGAAAGTAGAAACAATCAAAGTACTTGAAAGTGGTTTGGTAGGAAATCGAAGTGGAGCCTTGCAGCTGATGTTCGAACAAATGCACATTCTTTCACCTTTAGTGCAACCTCGCGAATTTCAATTCCTTCGCTATTGTCAACAAATTGAAGAAGGTGTATGGGTGATAGCAGATGTGTCATTTGATTCCTTTCGACAAAAAACCTCTATTTTTCACTCTTGGAGACATCCCTCGGGATGCATGATTCAAGAAATGCCTAATGGGTGTTCCATGGTTACTTGGGTCGAACATGTAGAAGTGGATGATAAGATCCAAACGCATCAGCTATACAAAGATGTTGTTGGTATAGGAATTGCATACGGAGCAGAAAGATGGATTATGGAACTTCAAAGAATTTGTGAGAGATTTGCTTGCTTTTATGTTGAAAAGATACCTAATCATGACTCTGAAGGAGTGATCAATTCTCTTGAAGGAAGGAGGAGTATAATGAATTTTTCTCATCGTATGCTAAAGATCTTTTGTGAAAGTTTAACCATGTCGGGTAACTTGGGCTTCCCACATTTAAATATGGAGAATAATAGCGGGGTGAAGGTCTCTATTCGCAAAAACACAAACCTTGGTCAACCAAATGGCATGATTGTTGTAGCCGCTACCTCTATTTGGCTTCCTCTCCATTATATGAAAGTTTTTGAGTTCTTCACAGATGATAAAAGACGGGCTCAGCCATTCATCCCTAGCGAGAACAATGCGTTGATTCTTCAAGAGAGTTTTACAAATCCCATGGGATCGTATGTTGTATATGCTCCAACTGATGTAACAACTATGAATTCGGCCATAAAGGGAGAAGACTCTTCAATGTTACCAGTTCTTCCATCAGGTTTTGTCATCTCTGCAGATGGTGAACCAAATGCAGCTTTGGGAGCATTTAACAGTGCAAATATTGAAAGATTAGGAGGCTCATTACTGACTGTGGCTTTCCAAATATTGGCTTCTACTCCAAATGGAATAAATGTGCCAAATATGGAATCTGTGGCAGCCGTGAACACCCTTTTAACCTCAACAATCCTAAAAGTCAAGGATGCTTTAAATTGCAACAACCTGGAGTGA 1950 0.3908 MAHKEFKIFSECPHPDERQRRQIAKDLGLEPKQVKFWFQNKRTQRKTQTERANNNALRVENERMHNENLVIKEALKNIICPSCGGPPYGDEGHEHSLKQLRLENARLKEEHEKVSSLLARYLEKQMSPPELQQAFIPITGSSSHAPAHGNSLNQEIDGSLCLDRSLGKQIMDGDHLLSNSLGSEGIEKALMSKVAITAIEELVRLLRINEPFWIKSSTQDGKLSLHHENYEKIFPRTNHFKGANVRVEATKDSGIVSINSIQLVDMFLDSDKWVNLFPTIVTKVETIKVLESGLVGNRSGALQLMFEQMHILSPLVQPREFQFLRYCQQIEEGVWVIADVSFDSFRQKTSIFHSWRHPSGCMIQEMPNGCSMVTWVEHVEVDDKIQTHQLYKDVVGIGIAYGAERWIMELQRICERFACFYVEKIPNHDSEGVINSLEGRRSIMNFSHRMLKIFCESLTMSGNLGFPHLNMENNSGVKVSIRKNTNLGQPNGMIVVAATSIWLPLHYMKVFEFFTDDKRRAQPFIPSENNALILQESFTNPMGSYVVYAPTDVTTMNSAIKGEDSSMLPVLPSGFVISADGEPNAALGAFNSANIERLGGSLLTVAFQILASTPNGINVPNMESVAAVNTLLTSTILKVKDALNCNNLE 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1126 649 CDD homeodomain 7 48 IPR001356 GO:0003677
Ssu1g1126 649 ProSitePatterns 'Homeobox' domain signature. 23 46 IPR017970 GO:0000981|GO:0006355
Ssu1g1126 649 Pfam START domain 194 416 IPR002913 GO:0008289
Ssu1g1126 649 ProSiteProfiles START domain profile. 184 419 IPR002913 GO:0008289
Ssu1g1126 649 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 7 645 IPR042160 -
Ssu1g1126 649 CDD START_ArGLABRA2_like 188 415 - -
Ssu1g1126 649 Pfam Homeodomain 7 46 IPR001356 GO:0003677
Ssu1g1126 649 SMART START_1 193 416 IPR002913 GO:0008289
Ssu1g1126 649 SUPERFAMILY Bet v1-like 187 417 - -
Ssu1g1126 649 Gene3D - 6 64 - -
Ssu1g1126 649 Coils Coil 90 124 - -
Ssu1g1126 649 SUPERFAMILY Bet v1-like 472 613 - -
Ssu1g1126 649 SUPERFAMILY Homeodomain-like 7 52 IPR009057 -
Ssu1g1126 649 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 7 645 - -
Ssu1g1126 649 ProSiteProfiles 'Homeobox' domain profile. 1 48 IPR001356 GO:0003677
Ssu1g1126 649 SMART HOX_1 1 52 IPR001356 GO:0003677
Ssu1g1126 649 Gene3D - 192 396 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1126 Ssu-Chr1 24255856 24295652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1126 9 644 Homeobox Transcription Factor Family AT1G73360 41.033 2.12e-177 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu1g1126 START 2.9e-35 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1126 K09338 - gmx:100795075 1035.79