Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1113 ATGAAGCCCTTTAGCCTTTTAGTgttatctttatatttcttcTCTGTGGTGGGGCAGCTTCCTTCTCAGGACATTTTAGCATTGTTGGAGTTTAAAAAAGGCATCAAGCATGACCCTACTGGTTATGTCCTCAATTCCTGGAATGAGGAATCCATTGACTTTGATGGATGCCCATCTTCATGGAATGGAGTTCTGTGTAATGGTGGTAATGTTGCTGGGGTTGTCCTTGATAACTTAGGTCTCTCTGCTGACACTGACTTGAGTGTTTTTTCAAATCTGTCAAAGCTTGTGAAAATTTCCATGTCCAACAATTCCATATCAGGAAAACTACCTGACAACATTGCTGATTTCAAAAGCCTTGAATTCCTGGATATCTCCAATAACCTCTTTTCCTCATCCTTGCCATTGGGAATTGGTAAGTTAGGCAGCTTGCAGAATCTGTCATTGGCTGGAAACAACTTCTCTGGCCCAATACCTGACTCTATTTCAGAAATGGCTTCCATCAAGTCCCTGGACTTGAGCCGCAATTCCTTTTCTGGAGCGCTGCCAGCATCATTTACTAAGATGATTAGTCTTGTATCTCTTAACTTGTCGCATAATGGCTTCACTGGAAAAATTCCCAAAGGTTTTGAGCTGATCCCTGCCCTTGAAAAACTTGACTTGCATGGGAATATGCTTGATGGTAATTTGGATGTTGAATTTATGCTCTTATCAAGTGCCAGCTATGTTGATTTCAGTGGGAACATGCTATCGAGTTCTGATTCCAAGCAGAAGTTTCTACCGCAAATATCTGAAAGTATTAAGCATCTGAATCTAAGCCACAACAAGCTTACTGGGTCATTGGCTAGTGGATCTGTAGAACCTGCTTTCGAAAACTTGCAGGTGTTGGACCTCAGTTACAATCAGTTGGATGGAGAATTGCCtggatttgattttgtttatgaTCTCCAGGTCCTTAGGCTTAGCAACAACAGGTTTTCTGGATTTATTCCTAATGGTCTACTGAAAGGAGACTCTTTGGTTTTAGGTGAACTGGATTTGAGTGCCAACAATCTCTCAGGGCCACTAAGTATAATTACATCAACAACACTTCACTCTCTTAATCTCTCATCAAATGAGTTCACGGGTGAATTGCCGCTGCTGACTGGAAGCTGCGCTGTACTTGATCTGTCTAATAACAAATTAGAAGGAAATTTAACCAGGATGTTGAAATGGGGGAATATAGAATTTCTTGATCTCAGTGGGAATCATTTGATGGGGGTCATCCCTGAGGTAACACCTCAATTTTTGcgattaaattatttgaatctaTCCCATAATTCTCTTAGCAGCTCCCTTCCAAAAGTCTTAGCACAATATCCAAAGCTTAGAGTGCTTGACATTAGTTTCAACCAATTAGATGGGCTACTTCTAGCTAATCTGCTCACAATGCCCACATTGCAAGAACTGCATCTTGATAATAATATGATCGCTGGTGGCATCAATTTATCATCTTCTCCTGGCCAATCTGATCTTCAGATTCTTGATCTTTCTCACAACCAGCTTAATGGCTATTTTCCTGATGAATTTGGGTCATTAACTGGCCTGAAAGTGCTAAACATTGCTGGAAATAATTTTTCTGGTTCTCTTCCAACCACCATTGCTGACATGAGTTCACTAGACTCCCTGGATATATCACAGAATCATTTTACTGGTCCTCTACCAAATAACATGCCAAAGGGGCTCCAAAACTTTAATGCTTCACAAAATGATCTGTCTGGAGTTGTCCCGGAAGTTCTTAGGAAGTTTCCTagttcttctttctttcctGGGAATACCAAGTTACATTTGCCAAATGGTCCTCCTGGATCAACCACTTCACCTGCTGAAAGTTCCAAGAGGAAGCATATGAGCACCATCGTCAAAGTAATAATCATAGTTTCATGCGTGGTTGCACTCTTCATATTAATCTTGCTTGCCGTCTTCATACGCTATGTACGTATATCGAGATCTCCACCAGAATATGATACAAGTAAGGATATCCACAGGCGTCCTCAACCAATTATCTCAGCTCCTGTTCGTACGACAGATAGGGGTGGTGCTTTGGTTGTTTCAGCTGAGGACCTTGTGACCTCACGCAAAGAGTCACCATCAGAGATAATCACCTCTGACGAAAAAATGGCAGCTGTAACCGGCTTCTCTCCATCAAAACAAAGCCACTTTTCATGGTCACCAGAATCTGGTGATTCATTTGCTGGTGAAAATCTTGCAAGGCTAGATACAAGATCACCAGATCGGTTGGTTGGAGAGCTGCATTTTCTTGACGATACAATAACATTGACACCTGAGGAGCTCTCAAGGGCCCCGGCTGAAGTTTTGGGAAGAAGCAGTCACGGTACTTCTTACAAGGCAACTCTGGAGAATGGTTTGTTGTTGAGAGTGAAGTGGTTGAGGGAAGGAGTGGCAAAACAGAGAAAAGAATTTGTCAAggagacaaaaaaatttgcGAACATCAGACATCCAAATGTTGTGGGATTGAGAGGATATTATTGGGGTCCTACACAGCATGAGAAGCTTATACTTTCAGATTACATCTCACCAGGAAGTCTTGCTAGTTTTCTTTATGATCGACCAGGAAGAAAAGGTCCACCATTAACTTGGGTCCAGAGGCTCAAAATAGCAGTTGACGTAGCACGTGGCCTGAACTATCTCCATTTTGATCGTGCCATTCCTCATGGGAACCTCAAAGCTACAAATGTGTTGTTAGATACAACTGATATGAATGCACGAGTTGCCGATTACTGCCTTCACCGACTTATGACTCAAGCTGGTACCATTGAACAGATTCTTGATGCTGGGGTCTTGGGTTATCGTGCACCAGAGTTAGCTGCTTCCAAGAAGCCAATGCCCTCCTTCAAGTCAGATGTTTATGCTTTTGGAGTGATACTTTTGGAACTTCTAACTGGAAGGTGTGCTGGTGATGTGATATCTAGTGAGGAGGGAGGTGTTGATCTGACAGATTGGGTAAGGTTGTGTGTAGCAGAAGGTCGAGGCTCGGAATGTTTTGATGCTACCTTGATGCCAGAAATGGGTAATCCAGTTGTAGAAAAGGGAATGAAGGAGGTCCTGGGAATAGCCATGCGGTGCATTCGATCCGTTTCTGAAAGGCCTGGTATCAAGACTATTTATGAAGATCTCTCTTCTATATAG 3189 0.4146 MKPFSLLVLSLYFFSVVGQLPSQDILALLEFKKGIKHDPTGYVLNSWNEESIDFDGCPSSWNGVLCNGGNVAGVVLDNLGLSADTDLSVFSNLSKLVKISMSNNSISGKLPDNIADFKSLEFLDISNNLFSSSLPLGIGKLGSLQNLSLAGNNFSGPIPDSISEMASIKSLDLSRNSFSGALPASFTKMISLVSLNLSHNGFTGKIPKGFELIPALEKLDLHGNMLDGNLDVEFMLLSSASYVDFSGNMLSSSDSKQKFLPQISESIKHLNLSHNKLTGSLASGSVEPAFENLQVLDLSYNQLDGELPGFDFVYDLQVLRLSNNRFSGFIPNGLLKGDSLVLGELDLSANNLSGPLSIITSTTLHSLNLSSNEFTGELPLLTGSCAVLDLSNNKLEGNLTRMLKWGNIEFLDLSGNHLMGVIPEVTPQFLRLNYLNLSHNSLSSSLPKVLAQYPKLRVLDISFNQLDGLLLANLLTMPTLQELHLDNNMIAGGINLSSSPGQSDLQILDLSHNQLNGYFPDEFGSLTGLKVLNIAGNNFSGSLPTTIADMSSLDSLDISQNHFTGPLPNNMPKGLQNFNASQNDLSGVVPEVLRKFPSSSFFPGNTKLHLPNGPPGSTTSPAESSKRKHMSTIVKVIIIVSCVVALFILILLAVFIRYVRISRSPPEYDTSKDIHRRPQPIISAPVRTTDRGGALVVSAEDLVTSRKESPSEIITSDEKMAAVTGFSPSKQSHFSWSPESGDSFAGENLARLDTRSPDRLVGELHFLDDTITLTPEELSRAPAEVLGRSSHGTSYKATLENGLLLRVKWLREGVAKQRKEFVKETKKFANIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRKGPPLTWVQRLKIAVDVARGLNYLHFDRAIPHGNLKATNVLLDTTDMNARVADYCLHRLMTQAGTIEQILDAGVLGYRAPELAASKKPMPSFKSDVYAFGVILLELLTGRCAGDVISSEEGGVDLTDWVRLCVAEGRGSECFDATLMPEMGNPVVEKGMKEVLGIAMRCIRSVSERPGIKTIYEDLSSI 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1113 1062 ProSiteProfiles Protein kinase domain profile. 780 1062 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1113 1062 SUPERFAMILY L domain-like 43 379 - -
Ssu1g1113 1062 SUPERFAMILY Protein kinase-like (PK-like) 783 1059 IPR011009 -
Ssu1g1113 1062 MobiDBLite consensus disorder prediction 605 626 - -
Ssu1g1113 1062 Pfam Leucine rich repeat N-terminal domain 22 67 IPR013210 -
Ssu1g1113 1062 Gene3D Ribonuclease Inhibitor 190 257 IPR032675 -
Ssu1g1113 1062 Gene3D Ribonuclease Inhibitor 258 626 IPR032675 -
Ssu1g1113 1062 ProSiteProfiles Leucine-rich repeat profile. 292 314 IPR001611 GO:0005515
Ssu1g1113 1062 Gene3D Phosphorylase Kinase; domain 1 771 857 - -
Ssu1g1113 1062 SUPERFAMILY L domain-like 290 593 - -
Ssu1g1113 1062 Pfam Protein tyrosine and serine/threonine kinase 784 982 IPR001245 GO:0004672|GO:0006468
Ssu1g1113 1062 Gene3D Ribonuclease Inhibitor 22 185 IPR032675 -
Ssu1g1113 1062 Pfam Leucine Rich repeat 361 377 IPR001611 GO:0005515
Ssu1g1113 1062 PANTHER OS07G0626500 PROTEIN 6 1062 - -
Ssu1g1113 1062 SMART LRR_typ_2 550 574 IPR003591 -
Ssu1g1113 1062 SMART LRR_typ_2 165 188 IPR003591 -
Ssu1g1113 1062 SMART LRR_typ_2 503 525 IPR003591 -
Ssu1g1113 1062 SMART LRR_typ_2 117 141 IPR003591 -
Ssu1g1113 1062 SMART LRR_typ_2 290 312 IPR003591 -
Ssu1g1113 1062 SMART LRR_typ_2 429 452 IPR003591 -
Ssu1g1113 1062 SMART LRR_typ_2 189 212 IPR003591 -
Ssu1g1113 1062 SMART LRR_typ_2 526 549 IPR003591 -
Ssu1g1113 1062 SMART LRR_typ_2 313 337 IPR003591 -
Ssu1g1113 1062 PANTHER - 6 1062 - -
Ssu1g1113 1062 Pfam Leucine rich repeat 168 226 IPR001611 GO:0005515
Ssu1g1113 1062 Pfam Leucine rich repeat 411 466 IPR001611 GO:0005515
Ssu1g1113 1062 Pfam Leucine rich repeat 505 563 IPR001611 GO:0005515
Ssu1g1113 1062 Gene3D Transferase(Phosphotransferase) domain 1 859 1062 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1113 Ssu-Chr1 24036151 24040229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1113 9 1010 Receptor kinase-like Gene Family AT4G36180 27.634 3.70e-80 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu1g1113 PK_Tyr_Ser-Thr 2.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1113 - - gmx:100793639 1909.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1113 1 24036151 24040229 Ssu1g1113 1 24036151 24040229 ECH