Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1111 ATGGGGAGTGTCCTTGGGGAGGGACTCTTTGTCTTGCTGATTCTGGTGATAGTGTCTGTAACAGTGAGCACTGTGGATGCTCAACCAAAGTCTATTCTCTTAAATTGTGGTTCAAATTCTTCTGTGAATGTGGATGGTAGGAGATGGGTGGGGGACATGGCCACCGATAATAATGTCACCCTAAGCTCCCCTGGTGTTGTTGCTTCCACTTCTACTTTAAATGGGAATTCACTCTATGATCCCCTCTACAAAACAGCCAGAATTTTCACATCTCCTTTGAATTACACAATCAAGGATGTTCAGGGAAACTACTTTGTTAGGTTCCATTTCTGCCCCTTTGTGACTGAGGACTACAATGTGAATGAGTCCTCATTCGGTGCTGTAGTCAATGGTCTGAAACTGTTGTCAGAGTTTGATGTTCCAGGTAAGATATCCCACAAGAATACGAACTTGCTGAATTCTGGAAGGAATGCTACTTCATTCTTCTTGGTCAAAGAATATATTCTTGCTGTGAATGGGGATATGCTGGTGATTGAGTTTGTTCCAACCAGAAGCTCCTTTGGCTTCATCAATGCCATTGAGATTGTACCAGTTGTGGGAGAGCTTTTTGCTGGCTCAGTTAGTAGAGTTGGTGGAAGTGGTGGAAACTTAAATTTGACTGGACGTGCGATGGAGACAATGTATAGGTTGAACGTTGGTGGTCCTGAGATTGAATCCAATCAGGATCATGATCTTTGGAGAAGTTGGGAAGTGGATTCTAGTTATATGATCACAGAAAATGCTGGGTTTGGAATTAAGAACAGTTCTAATATTACGTATGCTTCCATGAATGATACTTCAGTGGCTCCTCTCCTTGTGTATGAAACTGCAAGGGCAATGTCTAACACTGAAGTCTTGGACAAAAGGTTCAACATGTCATGGAAATTTGAAGTAGATCCTGACTTTGATTATTTGGTCCGTTTGCATTTCTGTGAGCTGTTTTATGACAAGGCCAACGAGAGGATATTTAGGATCTACATAAACAATAGGACAGCTGCAGATAATGTTGATGTTTATGTGCGCGCAGGAGGGAAGAATAAAGCATATCACCAGGACTATTTTGATCCTGTGTCATCGAGGATTGACACGGTTTGGGTTCAACTCGGTCCTGACACTGCTGCTGGTGCTGCAGGAACTGATGCTCTCTTGAATGGTCTGGAGATCTTTAAGCTTAGTCGAAATGGGAACCTTGCCTATGTGGAGAGATATGTCTTAGGTGGCAATTCAGGAAGCAAATCAAAAGCAAGAGCTGTTTGGGTGGGAGTTGGAGCAGGTGTAGCTTCTGTAGCTATAGTTGCACTTATACTTGTTCTTGTTTTCTGTTTCTGTAAAAGCAGGAGGAAAGAATCAAGTGATACCAAGAACAACCCTCAGGGTTGGAGACCATTGTTCCTCTATGGGGGGGCTGCTGTGAACAGCACTGTGGGTGCCAAGGGATCGGCAGGAACTCAAAAGCTATATGGATCTGTGGCCTCAACCAGAGTTGGCAAGAGGTTTACATTGGCCGAACTCAATGCTGCAACAAACAACTTTGATGAGAGTTTGGTAATAGGAGTTGGAGGCTTCGGTAAGGTGTATAAGGGGGAGGTTGAAGATGGTGTTCCTGCCGCAATTAAGCGTGCCAACCCCCAGTCTGAGCAAGGTCTGGCTGAATTTGAGACAGAAATTGAGATGCTATCCAAACTCAGACACAGGCATCTAGTGTCCTTAATTGGTTTCTGTGAGGAGAAGAATGAAATGATCTTGGTTTATGAGTACATGGCCAATGGAACTCTTAGAAGCCACCTATTTGGGAGTGATCTTCCTCCATTATCTTGGAAGCAGCGCCTAGAAGTGTGCATTGGTGCTGCAAGGGGACTTCACTACCTTCACACGGGAGCCGAGCGTGGAATCATCCACAGGGATGTCAAGACAACCAATATACTGTTGGATGAGAACTTTGTAGCCAAAATGTCTGATTTTGGGTTGTCAAAAGATGGTCCAGCCTTTGAACACACCCATGTTAGCACAGCTGTGAAAGGAAGTTTTGGCTATCTAGACCCTGAGTACTTCAGAAGACAGCAATTGACTGAGAAATCAGATGTTTACTCCTTTGGGGTTGTGTTGTTTGAAGTTGTTTGTGCTAGAGCTGTCATAAACCCCACCTTGCCTAAAGATCAGATCAATCTTGCAGAATGGGCCATGAGATGGCAAAGGCAAAGATCACTTGAGACAATTATTGACCCTCATCTTAGAGGAAATTATTGTCCAGAATCATTGGCCAAGTTTGGAGAGATAGCAGAAAAATGTCTTGCTGATGATGGAAAGAGCCGCCCCACCATGGGAGAGGTGTTATGGCACTTGGAGTATGTGTTGCAACTACATGAAGCTTGGCTCAACATGGACACCACAGAAACTTCCTTCTCTAGTTGTAGTCATGCTTTGAAAGGTCCAAAAGATGGAGGAGTAGAAACGGTACATGAGCCTTCAGGTCAAGATGAAGTTGATTTTGATCACAAACGCCCAGCTGAATCTGATTGA 2559 0.44 MGSVLGEGLFVLLILVIVSVTVSTVDAQPKSILLNCGSNSSVNVDGRRWVGDMATDNNVTLSSPGVVASTSTLNGNSLYDPLYKTARIFTSPLNYTIKDVQGNYFVRFHFCPFVTEDYNVNESSFGAVVNGLKLLSEFDVPGKISHKNTNLLNSGRNATSFFLVKEYILAVNGDMLVIEFVPTRSSFGFINAIEIVPVVGELFAGSVSRVGGSGGNLNLTGRAMETMYRLNVGGPEIESNQDHDLWRSWEVDSSYMITENAGFGIKNSSNITYASMNDTSVAPLLVYETARAMSNTEVLDKRFNMSWKFEVDPDFDYLVRLHFCELFYDKANERIFRIYINNRTAADNVDVYVRAGGKNKAYHQDYFDPVSSRIDTVWVQLGPDTAAGAAGTDALLNGLEIFKLSRNGNLAYVERYVLGGNSGSKSKARAVWVGVGAGVASVAIVALILVLVFCFCKSRRKESSDTKNNPQGWRPLFLYGGAAVNSTVGAKGSAGTQKLYGSVASTRVGKRFTLAELNAATNNFDESLVIGVGGFGKVYKGEVEDGVPAAIKRANPQSEQGLAEFETEIEMLSKLRHRHLVSLIGFCEEKNEMILVYEYMANGTLRSHLFGSDLPPLSWKQRLEVCIGAARGLHYLHTGAERGIIHRDVKTTNILLDENFVAKMSDFGLSKDGPAFEHTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVVCARAVINPTLPKDQINLAEWAMRWQRQRSLETIIDPHLRGNYCPESLAKFGEIAEKCLADDGKSRPTMGEVLWHLEYVLQLHEAWLNMDTTETSFSSCSHALKGPKDGGVETVHEPSGQDEVDFDHKRPAESD 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1111 852 Gene3D - 31 198 - -
Ssu1g1111 852 Gene3D - 222 405 - -
Ssu1g1111 852 SMART serkin_6 524 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1111 852 CDD STKc_IRAK 530 795 - -
Ssu1g1111 852 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524
Ssu1g1111 852 Pfam Protein tyrosine and serine/threonine kinase 529 791 IPR001245 GO:0004672|GO:0006468
Ssu1g1111 852 SUPERFAMILY Protein kinase-like (PK-like) 502 796 IPR011009 -
Ssu1g1111 852 PANTHER OSJNBA0058K23.13 PROTEIN 21 835 - -
Ssu1g1111 852 Pfam Malectin-like domain 34 403 IPR024788 -
Ssu1g1111 852 ProSiteProfiles Protein kinase domain profile. 524 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1111 852 Gene3D Phosphorylase Kinase; domain 1 488 599 - -
Ssu1g1111 852 MobiDBLite consensus disorder prediction 826 852 - -
Ssu1g1111 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Ssu1g1111 852 Gene3D Transferase(Phosphotransferase) domain 1 600 817 - -
Ssu1g1111 852 PANTHER OS07G0166700 PROTEIN 21 835 IPR045272 GO:0004714|GO:0006468
Ssu1g1111 852 MobiDBLite consensus disorder prediction 818 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1111 Ssu-Chr1 24001198 24003756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1111 11 825 Receptor kinase-like Gene Family AT1G30570 65.606 0.0 1122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu1g1111 Malectin_like 3.4e-31 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1111 - - gmx:100791403 1506.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1111 1 24001198 24003756 Ssu1g1111 1 24001198 24003756 ECH