Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1109 ATGGCTAACTATTCCAACCCTCATATCTGCCAATGTCTGAGTCGCTCGTTAGCCTTCCGGCGACACTTACCAGTCACAGTCGCCGGAAACCGCCACAAGACCGGCCAACAATTGGTAGAGGAAGTGTTGTCCTTGGCCCAAGGCCTACTCCACCTCGGACTCACACCTGGTCACGTGGTTGCCATCTCTGCTTACAATAGtGATAGGTATCTGGAGTGGTTGTTAGCCATTGCATTTGTTGGAGGAATAGCTGCTCCTCTGAACTATCGCTGGAGTTTTGAAGAGGCAAGATTAGCAATGGCTGCATTGAGGCCAGTGATGTTAGTGACTGACGAGAGCAGTTACACATGGTACTCAAAACTCCAGCAAAATGATGTTCCATCTCTGAAGTGGCATATTTTGTTGGATTCCCCTTCCTCAGATTTCACAAAGTGGAATGTGTTAACTTCAGAAATGCTTAAGAGGCATGCTGTAAAGCTTCTACCATTTGAATACTCCTGGGCACCTGAAGGCACTGTTATAATATGCTTTACTTCAGGAACTACGGGAAAGCCTAAGGGAGTCACCCTAAGCCATGGAGCTTTGATCATACAATCCCTAGCCAAGATTGCCATAGTTGGATACAATGAGGATGATGTCTATCTGCATACTGCTCCATTATGCCATATTGGTGGCTTGTCATCAGCCTTGACCATGCTTATGGTTGGAGGTTGCCATGTCTTGACGCCAAAGTTTGATGCGGAATCAGCTGTTGGTGCCATAGAGCAATATGCAGTGACATCTTTTATCACAGTTCCTGCAATAATGGCCAGTCTGATTTCTATAATTAGgcaCAAAGAGATCTGGAAAGGGGGAGAACCTGTCAAGAAAATACTTAATGGGGGTGGAAGCCTCTCACTTGAGCTCATCAAGGAAACTAGCATATTCTTCCACAAAGCTAAACTTATTTCAGCTTATGGGATGACAGAGACATGCTCTTCATTGACATTCCTGACACTCTATGACCCAATGCATGGAACCACCAGCCAGTCCCTTCAAGCATTTGGTGTGGCAGGATCTAAGCTCATTCAGCAGCCACAAGGTGTTTGTGTTGGCAAGCCTGCACCCCATATAGAACTGAAGATAAGTGCAGATGCTTCTGGTCACATTGGGAGAATTTTAACAAGAGGACCACATATAATGCTCAGGTATTGGGATCAAACTCTCCCAAATCCTTTAAATCCAAATAATGAAGCCTGGCTTGACACAGGTGACATTGGATCAATTGATCATTATGGTAATTTGTGGCTCCTTGGACGAACAAATGGTCGTATCAAGAGTGGTGGGGAGAACATTTACCCTGAAGAGGTTGAGGCAATTCTACTACAACATCCAGGGATTGCAAGTGTTGTTGTTGTGGGAATCCCAGATGCTCGGCTAACAGAGATGGTAGCTGCATGTATCCAACTAAGAGAAAATTGGCAATGGTCAGAGCAGTCTGCTTCAAGTGAAGAGTTTCACCTGTCTAGAGAGAATCTCCAGAAATATTGTATAGACAATCATTTAAGCAGGTTTAAGATaccaaaaatgtttattatatggAGGAAGCCATTTCCACTCACTACCACAGGGAAAATAAGAACAGACCAAGTCCGAAAGGAAATTATGTCTCAGCTAAAATCTTTGCATAGTAATCTTTGA 1680 0.4369 MANYSNPHICQCLSRSLAFRRHLPVTVAGNRHKTGQQLVEEVLSLAQGLLHLGLTPGHVVAISAYNSDRYLEWLLAIAFVGGIAAPLNYRWSFEEARLAMAALRPVMLVTDESSYTWYSKLQQNDVPSLKWHILLDSPSSDFTKWNVLTSEMLKRHAVKLLPFEYSWAPEGTVIICFTSGTTGKPKGVTLSHGALIIQSLAKIAIVGYNEDDVYLHTAPLCHIGGLSSALTMLMVGGCHVLTPKFDAESAVGAIEQYAVTSFITVPAIMASLISIIRHKEIWKGGEPVKKILNGGGSLSLELIKETSIFFHKAKLISAYGMTETCSSLTFLTLYDPMHGTTSQSLQAFGVAGSKLIQQPQGVCVGKPAPHIELKISADASGHIGRILTRGPHIMLRYWDQTLPNPLNPNNEAWLDTGDIGSIDHYGNLWLLGRTNGRIKSGGENIYPEEVEAILLQHPGIASVVVVGIPDARLTEMVAACIQLRENWQWSEQSASSEEFHLSRENLQKYCIDNHLSRFKIPKMFIIWRKPFPLTTTGKIRTDQVRKEIMSQLKSLHSNL 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1109 559 Pfam AMP-binding enzyme 25 440 IPR000873 -
Ssu1g1109 559 ProSitePatterns Putative AMP-binding domain signature. 175 186 IPR020845 -
Ssu1g1109 559 Gene3D - 436 552 IPR045851 -
Ssu1g1109 559 PANTHER ACYL-COA SYNTHETASE FAMILY MEMBER 2, MITOCHONDRIAL 6 548 - -
Ssu1g1109 559 SUPERFAMILY Acetyl-CoA synthetase-like 8 552 - -
Ssu1g1109 559 PANTHER ACYL-COA SYNTHETASE 6 548 - -
Ssu1g1109 559 Pfam AMP-binding enzyme C-terminal domain 449 538 IPR025110 -
Ssu1g1109 559 Gene3D - 2 434 IPR042099 -
Ssu1g1109 559 CDD AFD_class_I 175 540 - -
Ssu1g1109 559 Coils Coil 545 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1109 Ssu-Chr1 23965784 23972272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1109 34 554 Monolignol Biosynthesis Gene Families AT4G05160 26.394 1.15e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1109 K14760 - gmx:100809925 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1109 1 23965784 23972272 Ssu1g1109 1 23965784 23972272 ECH