Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1108 ATGAATAATTACCGAATGGAACTTGGAAGACCTGCCTCaaGTAGAAGAAGATTGAGAGATTTATTGCTTCAGAGTGATAATCGTTTTTGTGCTGACTGTAATGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGAGTTTTTGTATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACTCATATATCAAAGGTTTTGTCTGTGACATTGGATGATTGGTCAGAGGATGAAATAGAAGCAATGATGGAAGTTGGGGGAAATGCTTCTgctaattcaatttatgaaGCTTATATTCCTGAAGGATATACGAAACCTGGACCAGATGCTGGTCATGAGCAGCGTGCAAAATTCATACGGtcaaaatatgaatttcaagaaTTTCTGAAACCAAGTTTGCGCATTGTGTCTGGAAAAAGCAGTCTACAATCAAGTTCTGCCAAAAGTGTTATGGATAGTTGTAACAGTACTAGTAGTTCACAGAGAATGGAAGGTATGGTAGAATTTATTGGAATGTTGAAGGTGAAAGTAATTAAAGGCACAAATTTAGCTATCAGAGATATAAAGTCAAGTGATCCATATGTTGTTTTGAGCCTTGGCCAGCAGACTGTCCAGACAACTATAATGAAAAGTAACTTGAATCCAGTCTGGAATGAGGAATACATGCTGTCTGTTCCCGAGCATTATGGACAGATGAAATTGAAAGTATTTGATCATGACACATTTTCTTCTGATGATATAATGGGAGAAGCAGACATTGATCTTCAGTCTCTGATAACCTCTGCTATGGCATTTGGAGATGCTGGAATGTTTGGCGATATGCAGATAGGAAAATGGTTAAAATCCGATGACAATGCACTAATTGAGGATAGCACAGTCAATATTATTGATGGTAAGGTTAAACAAATAATGTCACTCAAGCTCCAGAATGTTGAATCTGGAGAATTAGATCTTGAACTCGAGTGGATTCCTCTTGATCAATAG 987 0.3718 MNNYRMELGRPASSRRRLRDLLLQSDNRFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGTHISKVLSVTLDDWSEDEIEAMMEVGGNASANSIYEAYIPEGYTKPGPDAGHEQRAKFIRSKYEFQEFLKPSLRIVSGKSSLQSSSAKSVMDSCNSTSSSQRMEGMVEFIGMLKVKVIKGTNLAIRDIKSSDPYVVLSLGQQTVQTTIMKSNLNPVWNEEYMLSVPEHYGQMKLKVFDHDTFSSDDIMGEADIDLQSLITSAMAFGDAGMFGDMQIGKWLKSDDNALIEDSTVNIIDGKVKQIMSLKLQNVESGELDLELEWIPLDQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1108 328 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Ssu1g1108 328 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Ssu1g1108 328 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Ssu1g1108 328 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 129 IPR001164 GO:0005096
Ssu1g1108 328 Pfam C2 domain 173 262 IPR000008 -
Ssu1g1108 328 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 168 265 IPR035892 -
Ssu1g1108 328 CDD ArfGap 24 124 - -
Ssu1g1108 328 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 8 328 IPR044518 GO:0005096|GO:0005543
Ssu1g1108 328 Gene3D C2 domain 170 328 IPR035892 -
Ssu1g1108 328 SMART arf_gap_3 15 137 IPR001164 GO:0005096
Ssu1g1108 328 Pfam Putative GTPase activating protein for Arf 17 131 IPR001164 GO:0005096
Ssu1g1108 328 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Ssu1g1108 328 CDD C2_ArfGAP 171 315 - -
Ssu1g1108 328 Gene3D Arf GTPase activating protein 4 135 IPR038508 -
Ssu1g1108 328 ProSiteProfiles C2 domain profile. 154 269 IPR000008 -
Ssu1g1108 328 SMART C2_3c 173 268 IPR000008 -
Ssu1g1108 328 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 8 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1108 Ssu-Chr1 23944050 23956782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1108 8 328 C2H2 Transcription Factor Family AT4G21160 73.030 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1108 K12486 - gmx:100810806 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1108 1 23944050 23956782 Ssu1g1108 1 23944050 23956782 ECH