Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1105 ATGCAATGGTCGTTGGAGCGATACAACGACGATCGTTGCAGTGGTGAGACAACAGTCGCTAGAGCAGTGTGGCGGCAGCATGGAAGGGAATGGGGAGAGGTGGTGGAGCGAAAGAGGTTTATTAAAGGGAATGAGGGCATTCAGCAGCAAGAAGAGAAAGGTTTGCGGTGCCTGCTGCGAGGGAAGATGGTGTCCGGTTCCGGAATCTGCGCGAAGAGGGTGGTGGTGGACGCACGCCACCACATGCTGGGTCGACTCGCGTCGATCGTGGCGAAGGAGCTTCTGAACGGGCAGAAAGTAGTGGTTGTACGCTGCGAAGAGATTTGCATCTCCGGTGGTCTCGTGAGGCAGAAAATGAAGTACATGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCACGGACCCATCCACTTCCGTGCTCCCGCCAAAATTTTCTGGCGCACCGTTCGTGGAATGATACCACACAAGACGAAACGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTACGAGGGAATCCCTCCTCCGTATGACAAAACAAAGAGAATGGTTGTTCCTGATGCTCTCAAGGTGTTGAGGCTTCAGAAAGGACACAAGTTCTGCGTTTTGGGCAGGTTGTCTTCTGAAGTTGGATGGAGTTATTATGATACCATCAAGGAGctggaaaagaagagaaaggaaaaggcACATTTGGTTTACGAGAGAAAGAAGCAGCTCAATAAATTAAGGGTGAAAGCTGAAAAAGCTGCTGATGAGAAGCTGGGTTCCCAACTTGATATTCTTGCTCCTGTCAAGTACTGA 807 0.4932 MQWSLERYNDDRCSGETTVARAVWRQHGREWGEVVERKRFIKGNEGIQQQEEKGLRCLLRGKMVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGEAALARLKVYEGIPPPYDKTKRMVVPDALKVLRLQKGHKFCVLGRLSSEVGWSYYDTIKELEKKRKEKAHLVYERKKQLNKLRVKAEKAADEKLGSQLDILAPVKY 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1105 268 Pfam Ribosomal protein L13 72 177 IPR005822 GO:0003735|GO:0005840|GO:0006412
Ssu1g1105 268 PANTHER RIBOSOMAL PROTEIN L13 63 268 IPR005822 GO:0003735|GO:0005840|GO:0006412
Ssu1g1105 268 PANTHER 60S RIBOSOMAL PROTEIN L13A-4 63 268 - -
Ssu1g1105 268 TIGRFAM L13_A_E: ribosomal protein uL13 74 216 IPR005755 GO:0003735|GO:0006412|GO:0015934
Ssu1g1105 268 ProSitePatterns Ribosomal protein L13 signature. 151 174 IPR023563 GO:0003735|GO:0005840|GO:0006412
Ssu1g1105 268 CDD Ribosomal_L13 74 175 IPR005822 GO:0003735|GO:0005840|GO:0006412
Ssu1g1105 268 Gene3D - 218 268 - -
Ssu1g1105 268 SUPERFAMILY Ribosomal protein L13 74 216 IPR036899 GO:0003735|GO:0005840|GO:0006412
Ssu1g1105 268 Hamap 50S ribosomal protein L13 [rplM]. 73 197 IPR005822 GO:0003735|GO:0005840|GO:0006412
Ssu1g1105 268 Gene3D Ribosomal protein L13 70 216 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1105 Ssu-Chr1 23922504 23926720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1105 63 268 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 89.806 2.26e-139 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1105 K02872 - gmx:100499978 401.364