Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1104 ATGGCTTCTCCTACTCATGACCTCACAgATAATGAAACTGACGGGCAGCAACAGTCAGAATCACAAATGCAGCCTTTATCTGCAAATGGAATTTCTCATGCAGGTATTGGTACTCAGAATGTTCAGTATGCAACACCTCCGCAGCTTGGAACTGGACATGCTGTGGCACCGCCCACTTACCCATATCCAGATCCGTACTACAGAAGTATCTTTGCTCCCTATGATGCACAAACTTATCCCCCACAACCCTATGGTGGAAATCCAATGGTCCACCTTCAGTTAATGGGAATTCAACAAGCAGGTGTTCCTTTGCCAACTGATACCGTTGAGGAGCCTGTGTTTGTCAATGCAAAGCAGTATCATGGTATATTAAGACGTAGACAGTCCCGTGCTAAAGCTGAATCAGAAAAGAAAACTGCAAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCACTAAGAAGAGCAAGAGGATGTGGAGGTCGGTTTctgaattcaaagaaaaatgagaatcaACAGGATGAGGTTGCATCAGCTGACGAATCACAGTCCAATATCAATCTCAATTCTGATAAAAATGAGCTTGCGCCATCGGATAGGACATCCTAA 618 0.4288 MASPTHDLTDNETDGQQQSESQMQPLSANGISHAGIGTQNVQYATPPQLGTGHAVAPPTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKTARNRKPYLHESRHLHALRRARGCGGRFLNSKKNENQQDEVASADESQSNINLNSDKNELAPSDRTS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1104 205 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 188 - -
Ssu1g1104 205 MobiDBLite consensus disorder prediction 168 199 - -
Ssu1g1104 205 MobiDBLite consensus disorder prediction 1 33 - -
Ssu1g1104 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 111 166 IPR001289 GO:0003700|GO:0006355
Ssu1g1104 205 PRINTS CCAAT-binding transcription factor subunit B signature 143 166 IPR001289 GO:0003700|GO:0006355
Ssu1g1104 205 PRINTS CCAAT-binding transcription factor subunit B signature 112 134 IPR001289 GO:0003700|GO:0006355
Ssu1g1104 205 MobiDBLite consensus disorder prediction 127 143 - -
Ssu1g1104 205 MobiDBLite consensus disorder prediction 127 148 - -
Ssu1g1104 205 ProSitePatterns NF-YA/HAP2 subunit signature. 114 134 IPR018362 GO:0003677|GO:0016602
Ssu1g1104 205 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 188 IPR001289 GO:0003700|GO:0006355
Ssu1g1104 205 Gene3D - 109 170 - -
Ssu1g1104 205 SMART cbf3 108 169 IPR001289 GO:0003700|GO:0006355
Ssu1g1104 205 MobiDBLite consensus disorder prediction 160 205 - -
Ssu1g1104 205 ProSiteProfiles NF-YA/HAP2 family profile. 109 169 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1104 Ssu-Chr1 23902538 23910366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1104 1 205 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.556 1.44e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Ssu1g1104 CBFB_NFYA 4.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1104 K08064 - gmx:100809036 385.185