Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1100 ATGGCACTTTCTATGCACAAGGACTCAGCCAACAACCAGATGGATTCCAGCAAGTATGTGAGGTACACACCTGAGCAGGTCGAGGCTTTGGAGAGGGTCTATGCTGAATGCCCAAAGCCAAGCTCGTTGAGGAGGCAGCAGCTCATCAGAGAGTGCCCCATCCTTTCCAATATTGAACCCAAACAGATCAAAGTTTGGTTTCAAAATAGAAGGTGTCGTGAGAAGCAGAGGAAGGAGGCTTCCCGGCTGCAGACAGTGAACAGAAAGCTGACTGCAATGAACAAACTCTTAATGGAAGAGAATGACCGTTTGCAGAAGCAGGTTTCTCATCTGGTTTATGAGAATGGATATATGAAGCAACAGATACATACTGCCTCTGCTGGAACCGCCACAGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGAACCAACAGCAAAACCCAACACCTCAGCATCCCCACAGGGATGCTAACAACCCAGCTGGTCTTCTCGCCATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGTAACTGTAGTGGGGTGGCAGCACGAGCCTGCGGCCTTGTGAGTCTAGAGCCCACTAAGGTTGCTGAGATTCTTAAAGATCGGCAGTCGTGGTATCGTGACTGCCGATGCGTGGATGTGTTGAGTATAGTCCCCACAGGAAATGGGGGCACGATAGAGCTCATGTACATGCAGacaTATGCGCCAACAACTCTGGCAGCAGCACGGGACTTCTGGACACTAAGATACACTACAAGCTTGGAAGATGGAAGTCTTGTGATATGTGAGAGATCATTGACTTCCTCAACTGGTGGTCCCACAGGGCCTCCTTCATCAACCTTCGTAAGAGCTGAAATGCTTCCTAGTGGTTATCTAATTAGACCGTGTGAAGGTGGTGGATCCATTATTCATATTGTTGATCATATTGATTTAGATGTCTGGAGTGTCCCTGAAGTACTGAGGCCCCTCTATGAATCATCAAAAATCTTGGCTCAGAAAATGACTATTGCTGCCCTGCAACATATAAGACAGATTGCCCAAGAATCAAGTGGAGAAATTCAGTATGGTGGGGGACGCCAGCCTGCTGTCTTGAGGACATTTAGTCAGAGACTTTGCAGGGGCTTTAATGATGCTGTGAATGGGTTTGTGGATGATGGTTGGTCCCTGTTGGGTACTGATGGGGTGGAGGATGTGACTATAGCCATAAACTCGTCTCCAAACAAATTTTTGGGGTCCAATTACAATGCATCAATGTTCCCAGCATTTGGAGGTGGTGTTTTGTGTGCCAAGGCATCAATGCTCCTGCAGAATGTTCCTCCTGCTTTGCTTGTTCGATTTTTGAGGGAGCATCGATCAGAGTGGGCTGATTATGGGGTTGATGCATACTCTGCTGCATGCCTTAAAGCTAGTCCCTATGCAGTTCCTTGTGCAAGACCTGGTGGCTTCCCCAGTAGCCAGGTCATTTTACCTCTTGCTCACACTATTGAGCATGAAGAGTTCCTGGAGGTAGTTCGAATAGAGGGTCATGCATTTTCTCCTGAGGATGTTGCGTTAGCGCGCGACATGTATCTATTGCAGCTGTGCAGtggagttgatgaaaatgcaatTGGGGCTTGTGCTCAACTTGTGTTTGCACCTATTGATGAGTCATTTGCGGATGATGCTCTTTTACTGCCCTCTGGTTTTCGCGTCATTCCTTTGGATCCTAAAACAGATGGTCCAGCTGCTACTAGGACATTAGATTTGGCATCAACACTGGAAGTAGGATCTGGTAATGCTCGTCCAGCTGGTGAAGCTGATTTGAATGGGTACAACCTTAGGTCGGTTCTTACTATTGCTTTCCAATTTACCTTTGAGAATCATATGCGGGACAATGTGGCTGCTATGGCTCGCCAGTATGTGCGTAGTGTCGTGGGATCTGTTCAGAGGGTTGCCATGGCAATTGCTCCCTCCAGACTAAGTACCCAGTTGGGCCCAAAGTCGCTTCCTGGTTCGCCAGAGGCTCTTACTCTAGCACGATGGGTTTGTAGAAGCTACAGGATCCACACTGGCACAGAGCTTTTTAGAGTTGAGTCCACAGCTGGTGATGCAATCTTGAAGCAACTTTGGCACCATTCCGATGCAATCATGTGCTGTACTGTGAAAACAAATGCATCTCCAGTGTTCACCTTTGCAAACCAGGCTGGGCTAGATATGCTTGAAACCACTTTGGTCGCCCTCCAAGACATAATGCTTGATAAAGTTCTGGATGAGTCTAGCAGGAAGATTCTTTGCTCTGAGTTCTCCAAGATAATGCAACAGGGTTTTGCATATCTGCCGGCAGGGATATGTGTATCAAGTATGAATCGGCCAGTGTCCTATGAGCAGGCCATTGCATGGAAAGTCCTCAATGACGATGATTCTAATCACTGCCTAGCCTTCATGTTCATGAACTGGTCTTTTGTATGA 2541 0.4734 MALSMHKDSANNQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTASAGTATDNSCESVVMSGQNQQQNPTPQHPHRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRQSWYRDCRCVDVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPSSTFVRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLLGTDGVEDVTIAINSSPNKFLGSNYNASMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVALARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKTDGPAATRTLDLASTLEVGSGNARPAGEADLNGYNLRSVLTIAFQFTFENHMRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLSTQLGPKSLPGSPEALTLARWVCRSYRIHTGTELFRVESTAGDAILKQLWHHSDAIMCCTVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDESSRKILCSEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIAWKVLNDDDSNHCLAFMFMNWSFV 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1100 846 CDD homeodomain 18 78 IPR001356 GO:0003677
Ssu1g1100 846 SUPERFAMILY Bet v1-like 415 601 - -
Ssu1g1100 846 ProSiteProfiles START domain profile. 157 358 IPR002913 GO:0008289
Ssu1g1100 846 SUPERFAMILY Bet v1-like 167 378 - -
Ssu1g1100 846 MobiDBLite consensus disorder prediction 133 155 - -
Ssu1g1100 846 MobiDBLite consensus disorder prediction 133 160 - -
Ssu1g1100 846 Pfam MEKHLA domain 701 845 IPR013978 -
Ssu1g1100 846 CDD bZIP 70 109 - -
Ssu1g1100 846 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Ssu1g1100 846 Gene3D - 200 384 IPR023393 -
Ssu1g1100 846 Coils Coil 87 107 - -
Ssu1g1100 846 Pfam START domain 167 374 IPR002913 GO:0008289
Ssu1g1100 846 SMART HOX_1 15 81 IPR001356 GO:0003677
Ssu1g1100 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 846 - -
Ssu1g1100 846 SMART START_1 166 376 IPR002913 GO:0008289
Ssu1g1100 846 Gene3D - 9 84 - -
Ssu1g1100 846 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Ssu1g1100 846 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Ssu1g1100 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 846 IPR044830 GO:0003700
Ssu1g1100 846 CDD START_ArGLABRA2_like 161 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1100 Ssu-Chr1 23736054 23741510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1100 5 846 Homeobox Transcription Factor Family AT2G34710 80.615 0.0 1408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu1g1100 START 1.2e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1100 K09338 - gmx:100807428 1631.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1100 1 23736054 23741510 Ssu1g1100 1 23736054 23741510 ECH