Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1093 ATGAGTCCCCTTCGTGTGGAAGTAACAGTTGTGTGTTGTGTACTGGTTGTGCTTGGAGCACTACCATTCTCTTCAGATGCACAGCTAGACCCCTCCTTTTACAGGGACACATGTCCCACTGTGCATTCTATTGTACGTGAAGTCATTAGAAACGTTTCTAAATCAGACCCCCGAATGCTTGCTAGTCTCATCAGGCTCCACTTTCATGACTGCTTCGTTCAAGGATGTGATGGATCAATTTTGTTGAACAACACTGCCACGATAGTGAGCGAGCAAGAAGCTTTGCCAAACAACAACTCAATAAGAGGTTTGGATGTTGTGAACCAGATCAAGACTGCAGTGGAAAGTGCTTGTCCTGGCGTAGTTTCTTGTGCTGATATTCTTGCCCTTGCTGCTGAAATTTCCGTTGTTCTGGCTAATGGTCCTGACTGGAAAGTTCCACTGGGGAGAAGGGATAGTTTAACAGCAAACCAAACACTTGCTAATCAAAATCTTCCAGCTCCATTCTTCAACCTCACTCAACTTAAAGCAGCCTTTGCAGCTCAAGGCCTCAACACTACTGATCTAGTTGCACTCTCAGTCAATAGGTTCAGCAGTAACCAAACTCTTTTCTTTGAGAGCTTTAAGGCTTCAATGATAAAAATGGGCAACATTGGAGTGCTAACGGGATCTCAAGGAGAAATCAGAAAACAATGTAATTTTGTTAATGGGAATTCTGCTGGACTTGCTATCCTGGCCACCAAAGAATCATCAGAAGATGGCATGGCTAGCTATGTGGTCAGTCTCGCAACAgcaacacacacaaacacacacggAGTTCAAATTTTAGGCAGAAAAATGAGGTCTCTTCGTCTTGTAGCGATAGCTTTAAGCTGTGTAGTAGTTGTGCTTGGAGGGTTACCCTTCTCCTCAGATGCACAACTAGATCCCTTCTTTTACAAAGATACTTGTCCCAAGGTGCATTCCATTGTATTTGAAGTCATAAAGAAAGTTTCGAAAACGGATCCCCGTATGCCTGCCAGTCTCGTTAGGCTTTTCTTTCATGACTGTTTTGTCCAAGGTTGTGACGCATCAATTTTGTTGAACAACACTGCCACGATAGTGAGTGAGCAACAAGCCTTGCCAAATAACAACTCAATAAGAGGTTTGGATGTTGTAAACCAGATCAAGACAAAGGTGGAAAACGCTTGCCCTGGCATAGTTTCGTGTGCTGATATTCTTGCCCTTGCAGCTGAAGTATCTTCTTTTCTGAGTGACCAAGAGTTGTTCTCAACACCCGGTGCAGACACCATTAGCATTGTCAACAAGTTCAGTAGTGACCAAAAAGCTTTCTTCAAGAACTTCAAGGCTTCAATGATTAAAATGGGAAATATTGGTGTGCTAACTGGGAAGAAAGGAGAAATTCGAAAACaatgtaattttgttaataaaaaatctgCTGAACTTGATATAGGTACTGCGGCATCCGAATCTGAGGAGGGTATGGTTAGCTCAATATAG 1500 0.4173 MSPLRVEVTVVCCVLVVLGALPFSSDAQLDPSFYRDTCPTVHSIVREVIRNVSKSDPRMLASLIRLHFHDCFVQGCDGSILLNNTATIVSEQEALPNNNSIRGLDVVNQIKTAVESACPGVVSCADILALAAEISVVLANGPDWKVPLGRRDSLTANQTLANQNLPAPFFNLTQLKAAFAAQGLNTTDLVALSVNRFSSNQTLFFESFKASMIKMGNIGVLTGSQGEIRKQCNFVNGNSAGLAILATKESSEDGMASYVVSLATATHTNTHGVQILGRKMRSLRLVAIALSCVVVVLGGLPFSSDAQLDPFFYKDTCPKVHSIVFEVIKKVSKTDPRMPASLVRLFFHDCFVQGCDASILLNNTATIVSEQQALPNNNSIRGLDVVNQIKTKVENACPGIVSCADILALAAEVSSFLSDQELFSTPGADTISIVNKFSSDQKAFFKNFKASMIKMGNIGVLTGKKGEIRKQCNFVNKKSAELDIGTAASESEEGMVSSI 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1093 499 Gene3D - 32 165 - -
Ssu1g1093 499 Gene3D - 312 415 - -
Ssu1g1093 499 PANTHER PEROXIDASE 287 416 - -
Ssu1g1093 499 PANTHER PEROXIDASE 7 193 - -
Ssu1g1093 499 PANTHER PEROXIDASE 194 244 - -
Ssu1g1093 499 PANTHER PEROXIDASE 417 483 - -
Ssu1g1093 499 SUPERFAMILY Heme-dependent peroxidases 28 236 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 SUPERFAMILY Heme-dependent peroxidases 416 476 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 SUPERFAMILY Heme-dependent peroxidases 307 415 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 Gene3D - 456 476 - -
Ssu1g1093 499 Pfam Peroxidase 45 194 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 Pfam Peroxidase 326 419 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 CDD secretory_peroxidase 28 235 IPR033905 GO:0004601|GO:0042744
Ssu1g1093 499 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 Gene3D Peroxidase, domain 2 416 455 - -
Ssu1g1093 499 Gene3D - 216 236 - -
Ssu1g1093 499 Gene3D Peroxidase, domain 2 195 215 - -
Ssu1g1093 499 PANTHER PEROXIDASE 72-RELATED 287 416 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 PANTHER PEROXIDASE 72-RELATED 194 244 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 PANTHER PEROXIDASE 72-RELATED 7 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 PANTHER PEROXIDASE 72-RELATED 417 483 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 ProSiteProfiles Plant heme peroxidase family profile. 28 476 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1093 499 Gene3D Peroxidase, domain 2 166 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1093 Ssu-Chr1 23441917 23506444 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1093 418 484 Peroxidase AT3G49110 45.588 1.55e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1093 K00430 - gmx:111064645 340.117