Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1090 ATGGGTAAGGTTCACAAATCTCTTGCACGTGTAGGGAAAGTGAGAGGACAAACTCCCAAAGTGGTGAAgcaagacaagaagaagaagccacGCGAATGTGCTCACAAGCAAATGCAATACAACTATCGATTTGTCACCTTCGTGGTGGGATTCGGAAAGAAGCGTGGACCAAACTTGTCGGAGAAGTGA 189 0.4074 MGKVHKSLARVGKVRGQTPKVVKQDKKKKPRECAHKQMQYNYRFVTFVVGFGKKRGPNLSEK 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1090 62 MobiDBLite consensus disorder prediction 1 33 - -
Ssu1g1090 62 PANTHER 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI 1 62 - -
Ssu1g1090 62 MobiDBLite consensus disorder prediction 19 33 - -
Ssu1g1090 62 Pfam Ribosomal protein S30 3 58 IPR006846 GO:0003735|GO:0005840|GO:0006412
Ssu1g1090 62 PANTHER 40S RIBOSOMAL PROTEIN S30 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1090 Ssu-Chr1 23362621 23362809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1090 1 62 Cytoplasmic Ribosomal Protein Gene Family AT5G56670 82.258 6.95e-24 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1090 K02983 - rcu:8265106 95.5153