Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1089 ATGGGTTCCATGCGTCTCGTAGTAGTGGCAGTGTGGTGTGCGTTTGCGATGCATGCAGGGTTTTCAGTCTCTTATGCTGAGCTCAGTTCTACGTACTACAACGAAACATGTCCACTGCTATACGATACTGTGTATGCAGTCATCTACGATGCTTCCCTCACCGATGTCCGCATCGGTGCCAGCCTCATGAGGCTTCATTTCCATGATTGCTTTGTTCAAGGTTGTGATGGATCAATTTTGCTGAACGACACTGCTACAATAGAAAGCGAGCAAGATGCACTTCCAAATAACAACTCAATAAGGGGCTTGGAAGTCGTCAATAACGTTAAGACGGCGGTGGAAAGTATTTGTCCAGCCACAGTTTCTTGTGCTGATATTCTTGCTATTGCAGCTGAAGTAGCTTCTGTTCTGGGAGGAGGTCCATCATGGTCAGTTCTATTAGGAAGAAGGGATAGCTTAACAGCAAACAGAACCCTTGCAAATATAAACCTTCCAGCACCCTCCGACACACTGGATGAACTTAAAGAATCCTTTACTAATCAAGGTCTCAACACCACGGATTTAGTTACACTCTCAGGTGCTCATACGTTTGGAAGAGCTCACTGCAGCACATTCGATGACCGATTATACGACTTCAACGATACTGGAAGTGCTGATCCTACTCTGAACACAACTTACTTAGGAACACTGAGTGAGATATGCCTCGAGAATGCAACTGAGAATAACATCACCAATTTGGACCTGACCACACCAGATGAATTTGATAACAAATACTACTCCAATCTTCAGGAGCTCAATGGCTTACTTCAGAGCGACCAAGGACTGTACTCCACTTCTGATTCTGATACCATTGACCTTGTCGATAGCTTCAGTGGTGACCAAGATACTTTCTTTTCCAACTTTATAGTGTCAATGATAAAAATGGGTAATATTGGAGTGCTGGAGGGGGATGAAGGAGAAATTCGCTTGCaatgtaattatgtgaatgGGGAATCGTCTGGATTAGCCGGTGTGGCATCCAAAGATCCTAAAGACAGTCTGGTTGCCCAGTCTAAGTAA 1059 0.4391 MGSMRLVVVAVWCAFAMHAGFSVSYAELSSTYYNETCPLLYDTVYAVIYDASLTDVRIGASLMRLHFHDCFVQGCDGSILLNDTATIESEQDALPNNNSIRGLEVVNNVKTAVESICPATVSCADILAIAAEVASVLGGGPSWSVLLGRRDSLTANRTLANINLPAPSDTLDELKESFTNQGLNTTDLVTLSGAHTFGRAHCSTFDDRLYDFNDTGSADPTLNTTYLGTLSEICLENATENNITNLDLTTPDEFDNKYYSNLQELNGLLQSDQGLYSTSDSDTIDLVDSFSGDQDTFFSNFIVSMIKMGNIGVLEGDEGEIRLQCNYVNGESSGLAGVASKDPKDSLVAQSK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1089 352 Gene3D - 32 329 - -
Ssu1g1089 352 Pfam Peroxidase 47 291 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1089 352 PANTHER PEROXIDASE 72-RELATED 7 337 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1089 352 PANTHER PEROXIDASE 7 337 - -
Ssu1g1089 352 CDD secretory_peroxidase 27 328 IPR033905 GO:0004601|GO:0042744
Ssu1g1089 352 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1089 352 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1089 352 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1089 352 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1089 352 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1089 352 ProSiteProfiles Plant heme peroxidase family profile. 27 329 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1089 352 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Ssu1g1089 352 Gene3D Peroxidase, domain 2 165 308 - -
Ssu1g1089 352 SUPERFAMILY Heme-dependent peroxidases 28 329 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu1g1089 352 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Ssu1g1089 352 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1089 352 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1089 352 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1089 352 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1089 352 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1089 352 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1089 352 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1089 352 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1089 352 PRINTS Plant peroxidase signature 303 316 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1089 Ssu-Chr1 23349770 23355240 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1089 21 333 Peroxidase AT5G06730 55.911 1.50e-128 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1089 K00430 - gmx:548068 533.487