Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1088 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACGCCGCTCCGTCCACCGCCGCCGCCGCTTCCGGCCCGCTCGTCCAGCACGACTCTTCCGCGGCCGCCTCCGCCGTATCCAACGGAGGCCCCGCCGCCGCCGCTCCCTCGGCGGCGGACCCCGCGGCCGGCAACGTCCCCGGGCGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTGCGCAGCCTGTGCATGAAGGGCGACGCGTGCGGGTTCCTGCACCAGTACGACAAGGCGCGGATGCCGGTGTGCCGGTTTTTCCGGCTCTACGGGGAGTGCCGGGAACAGGATTGCGTGTATAAGCACACCAATGAAGACATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCTAATGGGCCTGATTGCCGATATAGGCATGCAAAATCTCCTGGACCTCCGCCTCCTGTTGAAGAGGTCCTTCAAAAGATCCAACATTTATATTCCTACAATTATAGTGCATCTAACAAATTTTTCCAGCAAAGGAGTTCTAGTTATACTCAACAAACTGAAAAAACCCAGCTTCCTCAAGGAACTAATTCTACAAACCAAGGGGTGACTGGAAAACCATTACCAGCAGAATCGGGAAATGCCCAGCCACAGCAACAAGTTCAACAGTCTCAGCAGCAGGTCAGCCAGAGCCAAATGCAAAATCCTGCTAATGGCCAGCCTAATCAAGCCAATAGAACTGCAACCCCTTTACCTCAAGGAATATCTAGgtattttattgttaaaagttGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTTTGGGCAACTCAAAGGAGCAATGAATCCAAACTAAATGAAGCATTTGAATCTGTGGAAAATGTGATATTAATTTTCTCAGTCAACCGTACTAGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGGAACTGGAAATATGCTCATGGAACTGCACATTATGGGCGAAATTTCTCTGTTAAATGGTTGAAGTTATGTGAACTGTCATTCCACAAAACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAGCCCACTATTGGAGAGCAGCTGGCATCCTTGCTTTATCTTGAGCCGGATAGTGAACTTATGGCTATCTCGGTTGCAGCGGAGTCTAAACGTGAAGAAGAGAAAGCAAAGGGAGTGAATCCAGATAATGGAGGTGAAAATCCAGATATTGTCCCATTTGAAgacaatgaagaagaagaagaggaagaaagtgATGAAGAGGAGGAGAGCTTTGGTCATGGTGTAGGGCCGGCTGGCCAAGGCAGAGGTAGGGGCAGAGGTATGATGTGGCCGCCTCATATGCCTCTTGGGCGTGGAGCCCGACCCATCCCTGGAATGCAGGGCTTTAACCCTGTGATGATGGGTGATGGGTTATCCTATGGGCCTGTTGCGCCTGATGGTTTTGGTATGCCAGATCTTTTTGGTGTGGGACCCCGTGCTTTTGCTCCATATGGTCCTAGGTTCTCTGGTGATTTTGGAGGCCCCCCAGCAGCCATGATGTTTCGCGGGCGGCCCTCTCAACCTGGGATGTTTCCAGGTGGTGGGTTTGGGATGATGATGAACCCTGGACGTGCTCCCTTCATGGGGGGGATGGGGGTTGCAGGTGCAAATCCCCCAAGAGCTGGTAGACCAGTTAATATGCCTCCAATGTTTCCACCACCTCCACCCCTACCTCAGAATGCAAATCGTGTTGTGAAAAGAGATCAAAGAACTACTGATCGAAATGATAGGTATGGTTCAGGATCAGAGCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGTGCTCCTGATGATGACATGCAGTATCAGCAAGGATACAAAGCGAACCAGGATGATCATCCTGCTGTGAACAACTTCAGGACTGATGATAGTGAAAGTGAGGATGAGGCACCTAGGCGGTCCAGACATGGAGAGggtaaaaagaaaaggtga 2055 0.4959 MEDSEGVLSFDFEGGLDAAPSTAAAASGPLVQHDSSAAASAVSNGGPAAAAPSAADPAAGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYSASNKFFQQRSSSYTQQTEKTQLPQGTNSTNQGVTGKPLPAESGNAQPQQQVQQSQQQVSQSQMQNPANGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFESVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPTIGEQLASLLYLEPDSELMAISVAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAGQGRGRGRGMMWPPHMPLGRGARPIPGMQGFNPVMMGDGLSYGPVAPDGFGMPDLFGVGPRAFAPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRAPFMGGMGVAGANPPRAGRPVNMPPMFPPPPPLPQNANRVVKRDQRTTDRNDRYGSGSEQGKSQDMLSQSGAPDDDMQYQQGYKANQDDHPAVNNFRTDDSESEDEAPRRSRHGEGKKKR 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1088 684 MobiDBLite consensus disorder prediction 582 600 - -
Ssu1g1088 684 ProSiteProfiles Zinc finger C3H1-type profile. 121 148 IPR000571 GO:0046872
Ssu1g1088 684 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 683 IPR045168 -
Ssu1g1088 684 MobiDBLite consensus disorder prediction 657 676 - -
Ssu1g1088 684 Gene3D ph1033 like domains 236 395 - -
Ssu1g1088 684 MobiDBLite consensus disorder prediction 431 449 - -
Ssu1g1088 684 SMART c3hfinal6 95 121 IPR000571 GO:0046872
Ssu1g1088 684 SMART c3hfinal6 67 93 IPR000571 GO:0046872
Ssu1g1088 684 SMART c3hfinal6 123 147 IPR000571 GO:0046872
Ssu1g1088 684 MobiDBLite consensus disorder prediction 574 684 - -
Ssu1g1088 684 ProSiteProfiles YTH domain profile. 257 392 IPR007275 GO:0003723
Ssu1g1088 684 ProSiteProfiles Zinc finger C3H1-type profile. 67 94 IPR000571 GO:0046872
Ssu1g1088 684 MobiDBLite consensus disorder prediction 37 62 - -
Ssu1g1088 684 MobiDBLite consensus disorder prediction 606 620 - -
Ssu1g1088 684 MobiDBLite consensus disorder prediction 181 252 - -
Ssu1g1088 684 MobiDBLite consensus disorder prediction 407 470 - -
Ssu1g1088 684 Pfam YT521-B-like domain 257 319 IPR007275 GO:0003723
Ssu1g1088 684 Pfam YT521-B-like domain 336 391 IPR007275 GO:0003723
Ssu1g1088 684 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 683 - -
Ssu1g1088 684 MobiDBLite consensus disorder prediction 621 656 - -
Ssu1g1088 684 Gene3D - 63 124 - -
Ssu1g1088 684 SUPERFAMILY CCCH zinc finger 67 98 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1088 Ssu-Chr1 23306461 23323837 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu1g1088 YTH 3.4e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1088 K14404 - gmx:100802826 1193.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1088 1 23306461 23323837 Ssu1g1088 1 23306461 23323837 ECH