Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1078 ATGAAGGAAGGTGGTGGCAGGAAGCAGGGTGCAGCCTCACCCTGTGCTGCATGCAAGCTTCTCAGGAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCATATTTCCCAGCAGATGAACCCCAAAAGTTTGCAAATGTGCACAAGGTGTTTGGTGCTAGCAATGTCAACAAGATGCTCCAGGACCTACCAATGCATCAACGCGGGGATGCGGTGAGCAGCATGGTGTACGAGGCCAATGCCAGAGTCCGAGACCCTGTTTATGGGTGCGTTGGGGCCATCTCTTCGCTTCAGCAACAGATTGATGTGCTACAGACCCAACTGGCCCTGGCCCAGGCTGAGGTGGCCCACCTTCGGGTGCGACAAAATAGATGCTTTTCTAATCATGGGCTTAGGCCCACTAGCCCAACCAACAGTGGGTTTCCATCATCCAAGACCTTGAACTCACATGCCAAGCCTGTTTTTGACATGGACATGATGGGGGACCAGGCTAGCTATGGAGGTTCAATGTGGTCATGA 516 0.5271 MKEGGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVAHLRVRQNRCFSNHGLRPTSPTNSGFPSSKTLNSHAKPVFDMDMMGDQASYGGSMWS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1078 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 158 - -
Ssu1g1078 171 Coils Coil 93 120 - -
Ssu1g1078 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 158 - -
Ssu1g1078 171 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Ssu1g1078 171 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1078 Ssu-Chr1 23174447 23178781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1078 1 171 AS2 family AT1G31320 78.488 1.47e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu1g1078 LOB 1.8e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1078 - - gmx:100794219 336.65