Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1069 ATGGCTCTTTCAGCTGAACCCTCATCATCTTTGAGCTTTACATCATCTTCCCATTTATCAAATGGCTCAGTTAGTCACAACATATGCTCTTCTTACGGCTCTGATCCTGGACCTAACGGTCATAACCTTGAGGTTATCAGTTTGAGTAAGCTTAGCTCCAATTTGGAGCAGCTTTTGATTGAACCTGGTTGTGATTATAGTGATGCCGACATCATTGTGGAAGGACTTCCGGTTAGTGTTCATCGATGTATTCTGGCCTCTAGGAGTAAGTTTTTCCATGAATTATTCAAGAGAGAGAAGGGGTCATCAGAAAAAGAAGGGAAATTGAAGTATTGCATGAGTGATTTGTTGCCTTATGGCAAGGTTGGATATGAAGCCTTCCACATATTCCTGGGCTATGTTTATACTGGTAAACTGAAGCCCTCTCCAATGGAGGTGTCTACATGTGTTGACAATGTGTGTGCCCATGATGCTTGTAGACCTGCAATTAACTTTGCTGTGGAGTTGATGTATGCCTCTTCCATTTTTCAAATACCAGAGTTGGTATCACTTTTCCAGcGGCGTCTCCTTAACTTTGTTGGAAAGGCTCTTGTGGAAGATGTCATCCCAATTCTCACTGTTGCTTTCCATTGTCAATTGAGTCAACTTGTCACTCAATGTATTGACAGGGTGGCCAGATCAGACCTTGATCAGATTTCAATTGAGAAAGAACTTCCTCAAGAACTCTCACAAAAAGTTAAATTGCTCCGCCGCAAACCTCAGCAAGATGTTGAAAATGATGCTTCTGTAGTGGATGCTGTGTCTCTAAAACGAATCACTAGAATACACAAGGCATTGGACTCAGATGATGTTGagcttgttaaacttcttttaaaTGAGTCGGACATTACTTTAGATGAAGCCAATGCTCTCCATTATGCTGCAGCCTACTGTGACCCCAAGATTGTTTCTGAGGCACTTAGTTTGGGTCTGGCTAATGTCAACCTTCGGAATTCTCGGGGTTACACAGTGCTTCACATTGCTGCTATGCGTAAAGAGCCTTCTATTATAGTATCCCTACTTACGAAAGGGGCTTGTGCATCAGATTTGACTTTTGATGGTCAGAGTGCTGTTAGTATTTGTAGGAGGTTGACAAGGCCAAAGGATTATCATGCAAAAACAGAGCAGgggaaagaaacaaacaaagatCGGATATGCATCGATGTTCTTGAAAGAGAAATGCGGAGGAATCCAATGGCTGGGGATGCCTGTATGTCTTCCCATACCATGGCTGACGATCTCCACATGAAACTACTATACCTTGAGAACAGAGTGGCATTTGCAAGACTTTTCTTCCCTTCGGAAGCCAAACTAGCAATGGACATTGCGCATGCTGAGACAACATCTGAGTTTGCTGGTCTTTCTGTATCGAAAGGTTCAAATGGCAACTTCAGGGAGGTTGATCTCAATGAGACTCCCATAGTGCAAAATAAAAGACTTCTTTGTAGGATGGAAGCCCTTATGAAAACAGTGGAGTTGGGGCGGCGCTATTTCCCGCATTGCTCGGAAGTGCTGGATAAGTTCATGGAGGATGACCTGCCTGACTTGTTTTACCTTGAGAAGGGGACCCAAGAAGAGCAGAGAATCAAAAGGTCGCGTTTCATGGAGCTTAAAGATGACGTCCACAAGGCTTTCAGCAAGGACAAGGCCGAGTTTAGCCGCTCTGggatttcttcttcatcttcctcaTCATCCCGCAGAGATTCTGTTGTACATTACAAGCCTAGGaaagtgtaa 1776 0.4206 MALSAEPSSSLSFTSSSHLSNGSVSHNICSSYGSDPGPNGHNLEVISLSKLSSNLEQLLIEPGCDYSDADIIVEGLPVSVHRCILASRSKFFHELFKREKGSSEKEGKLKYCMSDLLPYGKVGYEAFHIFLGYVYTGKLKPSPMEVSTCVDNVCAHDACRPAINFAVELMYASSIFQIPELVSLFQRRLLNFVGKALVEDVIPILTVAFHCQLSQLVTQCIDRVARSDLDQISIEKELPQELSQKVKLLRRKPQQDVENDASVVDAVSLKRITRIHKALDSDDVELVKLLLNESDITLDEANALHYAAAYCDPKIVSEALSLGLANVNLRNSRGYTVLHIAAMRKEPSIIVSLLTKGACASDLTFDGQSAVSICRRLTRPKDYHAKTEQGKETNKDRICIDVLEREMRRNPMAGDACMSSHTMADDLHMKLLYLENRVAFARLFFPSEAKLAMDIAHAETTSEFAGLSVSKGSNGNFREVDLNETPIVQNKRLLCRMEALMKTVELGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTQEEQRIKRSRFMELKDDVHKAFSKDKAEFSRSGISSSSSSSSRRDSVVHYKPRKV 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1069 591 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g1069 591 PANTHER REGULATORY PROTEIN NPR3 10 579 IPR044292 GO:0009862|GO:2000022|GO:2000031
Ssu1g1069 591 SMART BTB_4 67 193 IPR000210 GO:0005515
Ssu1g1069 591 PANTHER REGULATORY PROTEIN NPR3 10 579 - -
Ssu1g1069 591 SUPERFAMILY POZ domain 54 191 IPR011333 -
Ssu1g1069 591 ProSiteProfiles Ankyrin repeat region circular profile. 333 358 - -
Ssu1g1069 591 MobiDBLite consensus disorder prediction 565 581 - -
Ssu1g1069 591 MobiDBLite consensus disorder prediction 559 591 - -
Ssu1g1069 591 SUPERFAMILY Ankyrin repeat 263 376 IPR036770 -
Ssu1g1069 591 Pfam BTB/POZ domain 65 182 IPR000210 GO:0005515
Ssu1g1069 591 ProSiteProfiles BTB domain profile. 67 143 IPR000210 GO:0005515
Ssu1g1069 591 Gene3D - 266 407 IPR036770 -
Ssu1g1069 591 Pfam NPR1/NIM1 like defence protein C terminal 375 577 IPR021094 -
Ssu1g1069 591 CDD BTB_POZ_NPR_plant 50 193 - -
Ssu1g1069 591 SMART ANK_2a 299 329 IPR002110 GO:0005515
Ssu1g1069 591 SMART ANK_2a 333 365 IPR002110 GO:0005515
Ssu1g1069 591 SMART ANK_2a 270 298 IPR002110 GO:0005515
Ssu1g1069 591 ProSiteProfiles Ankyrin repeat profile. 333 358 IPR002110 GO:0005515
Ssu1g1069 591 Pfam Ankyrin repeats (3 copies) 276 358 IPR002110 GO:0005515
Ssu1g1069 591 Gene3D Potassium Channel Kv1.1; Chain A 41 225 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1069 Ssu-Chr1 22999159 23003190 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Ssu1g1069 NPR1_like_C 2.7e-97 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1069 K14508 - gmx:100217338 1041.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1069 1 22999159 23003190 Ssu1g1069 1 22999159 23003190 ECH